Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 17 Aligned Residues 328 % Identity 16% Template c3a5dM_ PDB info PDB header:hydrolase Chain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		N	L	R	T	G	D	.	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	P	E	N	A	R	N	K	I	L	F	E	N	L	T	P	L	H	A	N	S	R	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I
Query Conservation								.
Alig confidence								.
Template Conservation
Template Sequence		G	L	D	L	A	T	T	S	V	S	L	V	E	D	V	A	R	L	G	V	S	K	E	M	L	G	R	R	F	N	G	I	G	K	P	I	D	G	L	P	P	I	T	P	E	K	R	L	P	I	T	G	L	P	L	N	P	V	A	R	R	K	P	E	Q	F	I	Q	T	G	I	S	T	I	D	V	M	N	T	L
Template Known Secondary structure		T	T			T	T							S	S								G	G	G	T	T					T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																							.	.	.	.	.	.	.
Query SS confidence																																			.	.																							.	.	.	.	.	.	.
Query Sequence		G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	.	.	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q	R	L	V	.	.	.	.	.	.	.	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H
Query Conservation																																			.	.																							.	.	.	.	.	.	.
Alig confidence																																			.	.																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	G	Q	K	L	P	I	F	S	G	S	G	L	P	A	N	E	I	A	A	Q	I	A	R	Q	A	T	V	R	P	K	E	E	P	F	A	V	V	F	A	A	M	G	I	T	Q	R	E	L	S	Y	F	I	Q	E	F	E	R	T	G	A	L	S	R	S	V	L	F	L	N	K	A	D	D	P	T	I	E	R
Template Known Secondary structure		B	T	T		B							T	T	S														B						S																											S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.		.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.
Predicted Secondary structure																	.																																	.																							.
Query SS confidence																	.																																	.																							.
Query Sequence		V	Q	V	A	E	M	V	I	E	K	A	K	R	L	V	.	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T	.	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	.	E	G	G	S	L	T	I	I
Query Conservation																	.																																	.																							.
Alig confidence																	.																																	.																							.
Template Conservation
Template Sequence		I	L	T	P	R	M	A	L	T	V	A	E	Y	L	A	F	E	H	D	Y	H	V	L	V	I	L	T	D	M	T	N	Y	C	E	A	L	R	E	I	G	A	A	R	E	E	I	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	I	Y	E	R	A	G	V	V	E	G	K	K	G	S	V	T	Q	I
Template Known Secondary structure																			S										T															T	T					G	G	G			T	T										T	S				B	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																											.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.
Query Sequence		A	T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N	R	S	G	T	R	K	E	E	L	L	T	T	.	.	.	.	.	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G
Query Conservation																																																											.	.	.	.	.
Alig confidence								.																																																			.	.	.	.	.
Template Conservation								.
Template Sequence		P	I	L	S	M	P	.	D	D	D	R	T	H	P	I	P	D	L	T	G	Y	I	T	E	G	Q	I	Q	L	S	R	E	L	H	R	K	G	I	Y	P	P	I	D	P	L	P	S	L	S	R	L	M	N	N	G	V	G	K	G	K	T	R	E	D	H	K	Q	V	S	D	Q	L	Y	S	A	Y	A	N	G	V
Template Known Secondary structure							G	.	G	G		T	T	S							G	G	G		S					B							T	T		S	S		B		T	T	T				S	S	G	G	G	G		S	T	T	T	S		T	T
Template Predicted Secondary structure								.
Template SS confidence
		312	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	D	A	M	E	F	L	I	N	K	L	A	M	T	K	T	N	D	D	F	F	E	M	M	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	R	K	L	V	A	I	I	G	E	D	A	L	T	E	N	D	R	R	Y	L	Q	F	A	D	A
Template Known Secondary structure												G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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