Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 13 Aligned Residues 386 % Identity 18% Template c3a5dB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		L	K	N	T	P	V	S	E	L	I	T	L	G	E	N	M	G	L	E	N	L	A	R	M	R	K	Q	D	I	I	F	A	I	L	K	Q	H	A	.	.	K	S	G	E	D	I	F	G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	Y	V	S	P
Query Conservation																																								.	.
Alig confidence																																								.	.																																				.	.	.
Template Conservation																																																																													.	.	.
Template Sequence		M	L	G	A	R	M	Y	D	I	C	K	V	G	E	E	G	L	V	G	E	I	I	R	L	D	G	D	T	A	F	V	Q	V	Y	E	D	T	S	G	L	K	V	G	E	P	V	V	S	T	G	L	P	L	A	V	E	L	G	P	G	M	L	N	G	I	Y	D	G	I	Q	R	P	L	V	H	.	.	.	A	L
Template Known Secondary structure				T	T			T	T						T	T	S										S	S							S	S		G	G	G			T	T							S	S	S	S					S	T	T		T	T					T	T	S						.	.	.	S	S
Template Predicted Secondary structure																																																																													.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.				.	.
		84	.	.	.	.	.	90					.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																				.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Q	I	R	R	F	N	.	.	.	.	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	P	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	N	K	I	L	F	E	N	L	T	P	L	H
Query Conservation									.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.																						.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.
Template Sequence		D	R	E	K	K	W	A	W	T	P	M	V	K	P	G	D	E	V	R	G	G	M	V	L	G	T	V	P	E	F	G	F	.	T	H	K	I	L	V	P	P	D	V	R	G	R	V	K	E	V	K	P	A	G	E	Y	T	V	E	E	P	V	V	V	L	E	D	G	T	E	L	K	M	Y	H	T	W	P	V	R
Template Known Secondary structure			S	S											T	T					T	T								S	S	S	S	.								T	T											S					T	T	S						T	T						S						T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	S	R	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I	G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q
Query Conservation
Alig confidence																																																												.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		R	A	R	P	V	Q	R	K	L	D	P	N	T	P	F	L	T	G	M	R	I	L	D	V	L	F	P	V	A	M	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	Q	S	L	A	K	W	S	N	A	D	.	.	.	.	V	V	V	Y	V	G	C	G	E	R	G	N	E	M	T	D	V	L
Template Known Secondary structure		S					S					S		S	B				S								S			B	T	T								S	T	T	S	S												S	S		S	.	.	.	.								S			T	T	T	T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		221	.	.															.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V	I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	F	P	E	L	T	D	P	K	T	G	G	P	L	M	H	R	T	V	L	I	A	N	T	S	N	M	P	V	A	A	R	E	A	S	I	Y	V	G	V	T	I	A	E	Y	F	R	D	Q	G	F	S	V	A	L	M	A	D	S	T	S	R	W	A	E	A	L	R	E	I	S	S	R	L	E	E	M	P	A
Template Known Secondary structure		T	T	G	G	G				T	T	T	T			G	G	G	G								T	T	S																						T	T								S																T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
			287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure		.																							.	.	.	.
Query SS confidence		.																							.	.	.	.
Query Sequence		.	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	.	.	.	.	E	G	G	S	L	T	I	I	A	T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N
Query Conservation		.																							.	.	.	.
Alig confidence		.																							.	.	.	.															.
Template Conservation																																											.
Template Sequence		E	E	G	Y	P	P	Y	L	A	A	R	L	A	A	F	Y	E	R	A	G	K	V	I	T	L	G	G	E	E	G	A	V	T	I	V	G	A	V	S	P	P	.	G	G	D	M	S	E	P	V	T	Q	S	T	L	R	I	V	G	A	F	W	R	L	D	A	S	L	A	F	R	R	H	F	P	A	I	N	W	N
Template Known Secondary structure		G	G	G			T	T											T							T	T	S														S	.	S	S				T	T										S					B							T	T		S	S		B		T	T
Template Predicted Secondary structure																																											.
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.		.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.								.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		R	S	G	T	R	K	E	E	L	L	.	.	.	.	.	.	.	T	T	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E	F	L	I
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	Y	S	L	F	T	S	A	L	D	P	W	Y	R	E	N	V	A	E	D	Y	P	E	L	R	D	A	I	S	E	L	L	Q	R	E	A	G	L	Q	E	I	V	Q	L	V
Template Known Secondary structure		T				T	T												T		T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.