Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 11 Aligned Residues 310 % Identity 18% Template c2qe7C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 Resolution 3.06 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	P	E	N	A	R	N	K	I	L	F	E	N	L	T	P	L	H	A	N	S	R	.	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I
Query Conservation																																																									.
Alig confidence																																			.																						.
Template Conservation																																			.
Template Sequence		E	I	R	E	G	T	Q	V	K	R	T	G	R	I	M	E	V	P	V	G	E	A	L	L	G	R	V	V	N	P	L	G	Q	.	P	L	D	G	R	G	P	I	E	T	A	E	Y	R	P	I	E	S	P	A	P	G	V	M	D	R	K	S	V	H	E	P	L	Q	T	G	I	K	A	I	D	S	M	I	P	I
Template Known Secondary structure		T			T	T										S					S	G	G	G	T	T					T	T			.	B	S	S		S											S	S						T	T	S	B					S	B				S							S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q	R	L	V	.	.	.	.	.	.	.	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																										.	.																														.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		G	R	G	Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	T	I	A	I	D	T	I	.	.	I	N	Q	K	G	Q	D	V	I	C	I	Y	V	A	I	G	Q	K	Q	S	T	V	A	G	V	V	E	T	L	R	Q	H	D	A	L	D	Y	T	I	V	V	T	A	S	A	S	E	P	A	P	L	L	Y	L
Template Known Secondary structure		B	T	T		B							S	S	S	S										.	.		G	G	G	S		S									S																T	T		S	T	T								T	T	S
Template Predicted Secondary structure																										.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.				310	.	.	.	.	.	.	.
Predicted Secondary structure																																															.																								.	.	.
Query SS confidence																																															.																								.	.	.
Query Sequence		V	A	E	M	V	I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T	.	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	E	.	.	.	G	G	S	L	T	I	I	A
Query Conservation																																															.																								.	.	.
Alig confidence																																															.																								.	.	.
Template Conservation
Template Sequence		A	P	Y	A	G	C	A	M	G	E	Y	F	M	Y	K	G	K	H	A	L	V	V	Y	D	D	L	S	K	Q	A	A	A	Y	R	E	L	S	L	L	L	R	R	P	P	G	R	E	A	Y	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	K	L	S	D	E	K	G	G	G	S	L	T	A	L	P
Template Known Secondary structure															T	T	T																								T	T					S	T	T	S		T	T										T	S			B	B		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N	R	S	G	T	R	K	E	E	L	L	T	T	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		F	I	E	T	Q	.	A	G	D	V	S	A	Y	I	P	T	N	V	I	S	I	T	D	G	Q	I	F	L	E	S	D	L	F	Y	S	G	V	R	P	A	V	N	V	G	I	S	V	S	R	V	G	G	A	A	Q	I	K	A	M	K	K	V	A	G	T	L	R	L	D	L	A	Q	Y	R	E	L	Q	A	F	A
Template Known Secondary structure						S	.	T	T			S	S								T	T	S	S											T	T	T		S	S		B		T	T	T				S	S	G	G	G	G	S																					G	G	G	S	T
Template Predicted Secondary structure							.
Template SS confidence
		318	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		398	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	I	N	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	G	S	D	L
Template Known Secondary structure		T					T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions