Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 24 Aligned Residues 337 % Identity 20% Template c1vdzA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:a-type atpase subunit a; PDBTitle: crystal structure of a-type atpase catalytic subunit a from2 pyrococcus horikoshii ot3 Resolution 2.55 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.														80	.	.	.	.	.	.	.	.	.	90	.					.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Query Sequence		K	S	G	E	D	I	F	G	D	G	V	L	E	I	L	Q	D	G	F	G	F	L	R	S	A	D	S	S	Y	L	A	G	P	D	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	S	P	S	Q	I	R	R	F	N	L	.	.	.	.	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation
Template Sequence		R	P	G	E	P	V	V	G	T	G	A	S	L	S	V	E	L	G	P	G	L	L	T	S	I	Y	D	G	I	Q	R	P	L	E	V	I	R	E	K	T	G	D	F	I	A	R	G	V	T	A	P	A	L	P	R	D	K	K	W	H	F	I	P	K	A	K	V	G	D	K	V	V	G	G	D	I	I	G	E	V
Template Known Secondary structure									S	S									S	T	T		T	T					T	T	S			S	S					B			S	S			B						S	S		S	S											T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.																								.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	N	A	R	N	K	I	L	F	E	N	L	T	P	L	H	A	N	S	R	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	T	S	I	I	V	H	K	I	M	V	P	P	G	I	E	G	E	I	V	E	I	A	E	E	G	D	Y	T	I	E	E	V	I	A	K	V	K	T	P	S	G	E	I	K	E	L	K	M	Y	Q	R	W	P	V	R	V	K	R	P	Y	K	E	K	L	P	P	E	V	P	L	I	T	G	Q	R	V	I	D
Template Known Secondary structure				S	S	S									T	T											S					T	T	S								T	T	S							S						T	T	S					S					S		S	B				S
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.															.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	S	P	I	G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q	R	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	E	V	V	A
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.
Template Sequence		T	F	F	P	Q	A	K	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	H	Q	L	A	K	W	S	D	A	Q	.	.	.	.	V	V	I	Y	I	G	C	G	E	R	G	N	E	M	T	D	V	L	E	E	F	P	K	L	K	D	P	K	T	G	K	P	L	M	E	R	T	V	L	I	A
Template Known Secondary structure				S			B	T	T							S		T	T		T	T											S	S		S	.	.	.	.								S			T	T	T	T					S	S	G	G	G		B		T	T	T	S	S	B	G	G	G	G
Template Predicted Secondary structure																																					.	.	.	.
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		S	T	F	D	E	P	A	S	R	H	V	Q	V	A	E	M	V	I	E	K	A	K	R	L	V	E	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	.	.
Query Conservation																																																																																.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	T	S	N	M	P	V	A	A	R	E	A	S	I	Y	T	G	I	T	I	A	E	Y	F	R	D	M	G	Y	D	V	A	L	M	A	D	S	T	S	R	W	A	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	A	Y	L	A	S	K	L	A	E	F	Y	E	R	A	G	R	V	V	T
Template Known Secondary structure				T	T	S																						T	T											S	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
						308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.								.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																																	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																																	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	E	E	G	G	S	L	T	I	I	A	T	A	L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N	R	S	G	T	R	K	E	E	L	L	.	.	.	.	.	.	.	T	T	Q	E	E
Query Conservation		.	.	.	.																																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																.																																																	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		L	G	S	D	Y	R	V	G	S	V	S	V	I	G	A	V	S	P	P	.	G	G	D	F	S	E	P	V	V	Q	N	T	L	R	V	V	K	V	F	W	A	L	D	A	D	L	A	R	R	R	H	F	P	A	I	N	W	L	T	S	Y	S	L	Y	V	D	A	V	K	D	W	W	H	K	N	I	D	P	E	W
Template Known Secondary structure		S	S	S	S															S	.	S	S				T	T										S					B							T	T		S	S		B		T	T	T				T	T												T		T	T
Template Predicted Secondary structure																					.
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E	F	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	M	R	D	K	A	M	A	L	L	Q	K	E	S	E	L	Q	E	I	V	R	I	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions