Job Description P0AG30 Confidence 100.00% Date Thu Jan 5 11:27:58 GMT 2012 Rank 4 Aligned Residues 326 % Identity 18% Template c1skyE_ PDB info PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 Resolution 3.20 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		N	L	R	T	G	D	T	I	S	G	K	I	R	P	P	K	E	G	E	R	Y	F	A	L	L	K	V	N	E	V	N	F	D	K	P	E	N	A	R	N	K	I	L	F	E	N	L	T	P	L	H	.	A	N	S	R	L	R	M	E	R	G	N	G	S	T	E	D	L	T	A	R	V	L	D	L	A	S	P	I
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		G	L	I	R	G	M	E	V	I	D	T	G	A	P	I	S	V	P	V	G	Q	V	T	L	G	R	V	F	N	V	L	G	E	P	I	D	L	E	G	D	I	P	A	D	A	R	R	D	P	I	H	R	P	A	P	K	F	E	E	L	A	T	E	V	E	I	L	E	T	G	I	K	V	V	D	L	L	A	P	Y
Template Known Secondary structure		T			T	T															S	G	G	G	T	T					T	T	S		B		S	S	S					T	T	S					S							G	G	G	B			S							S								S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.
Query Sequence		G	R	G	Q	R	G	L	I	V	A	P	P	K	A	G	K	T	M	L	L	Q	N	I	A	Q	S	I	A	Y	N	H	P	D	C	V	L	M	V	L	L	I	D	E	R	P	E	E	V	T	E	M	Q	R	L	V	.	.	.	.	.	.	.	K	G	E	V	V	A	S	T	F	D	E	P	A	S	R	H	V	Q
Query Conservation																																																									.	.	.	.	.	.	.
Alig confidence																																			.																						.	.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		I	K	G	G	K	I	G	L	F	G	G	A	G	V	G	K	T	V	L	I	Q	E	L	I	H	N	I	A	Q	E	H	G	G	.	I	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	L	Y	H	E	M	K	D	S	G	V	I	S	K	T	A	M	V	F	G	Q	M	N	E	P	P	G	A	R	M	R
Template Known Secondary structure			T	T									S	S	S																	T			.								S	S															T	S	G	G	G	G								T	T	S
Template Predicted Secondary structure																																			.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																																.
Query SS confidence																.																																.
Query Sequence		V	A	E	M	V	I	E	K	A	K	R	L	V	E	.	H	K	K	D	V	I	I	L	L	D	S	I	T	R	L	A	R	A	Y	N	T	V	V	P	A	S	G	K	V	L	T	.	G	G	V	D	A	N	A	L	H	R	P	K	R	F	F	G	A	A	R	N	V	E	E	G	G	S	L	T	I	I	A	T	A
Query Conservation																.																																.
Alig confidence																.																																.																						.
Template Conservation																																																																						.
Template Sequence		V	A	L	T	G	L	T	M	A	E	Y	F	R	D	E	Q	G	Q	D	G	L	L	F	I	D	N	I	F	R	F	T	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	I	G	Y	Q	P	T	L	A	T	E	M	G	Q	L	Q	E	R	I	T	S	T	.	A	K	G	S	I	T	S	I	Q	A	I
Template Known Secondary structure																	S											T															T					G	G	G			T	T										T	T	S	S		B	.	S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		L	I	D	T	G	S	K	M	D	E	V	I	Y	E	E	F	K	G	T	G	N	M	E	L	H	L	S	R	K	I	A	E	K	R	V	F	P	A	I	D	Y	N	R	S	G	T	R	K	E	E	.	L	L	T	T	Q	E	E	L	Q	K	M	W	I	L	R	K	I	I	H	P	M	G	E	I	D	A	M	E	F
Query Conservation																																																				.
Alig confidence					.																																															.
Template Conservation					.
Template Sequence		Y	V	P	.	A	D	D	Y	T	D	P	A	P	A	T	T	F	S	H	L	D	A	T	T	N	L	E	R	K	L	A	E	M	G	I	Y	P	A	V	D	P	L	V	S	T	S	R	A	L	A	P	E	I	V	G	E	E	H	Y	Q	V	A	R	K	V	Q	Q	T	L	E	R	Y	K	E	L	Q	D	I	I	A
Template Known Secondary structure				S	.	T	T		S	S	S								T	T		S					B		T	T					T		S	S		B		T	T	T			B	T	T
Template Predicted Secondary structure					.
Template SS confidence
		307	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	N	K	L	A	M	T	K	T	N	D	D	F	F	E	M	M	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	G	M	D	E	L	S	D	E	D	K	L	V	V	H	R	A	R	R
Template Known Secondary structure					S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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