Job Description P52097 Confidence 100.00% Date Thu Jan 5 12:05:18 GMT 2012 Rank 2 Aligned Residues 425 % Identity 27% Template c3a2kB_ PDB info PDB header:ligase/rna Chain: B: PDB Molecule:trna(ile)-lysidine synthase; PDBTitle: crystal structure of tils complexed with trna Resolution 3.65 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		T	L	T	L	N	R	Q	L	L	T	S	R	Q	I	L	V	A	F	S	G	G	L	D	S	T	V	L	L	H	Q	L	V	Q	W	R	T	E	N	P	G	V	A	L	R	A	I	H	V	H	H	G	L	S	A	.	N	A	D	A	W	V	T	H	C	E	N	V	C	Q	Q	W	Q	V	P	L	V	V	E	R	V
Query Conservation																																																								.
Alig confidence																																							.																	.
Template Conservation																																							.
Template Sequence		F	I	H	R	H	Q	L	L	S	E	G	A	A	V	I	V	G	V	S	G	G	P	D	S	L	A	L	L	H	V	F	L	S	L	R	D	E	.	W	K	L	Q	V	I	A	A	H	V	D	H	M	F	R	G	R	E	S	E	E	E	M	E	F	V	K	R	F	C	V	E	R	R	I	L	C	E	T	A	Q	I
Template Known Secondary structure						T		S	S	S		S	S	B							S	S																T	.	T	T		B									T	T		T																	T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		81	.	.					.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure					.	.	.	.																									.	.
Query SS confidence					.	.	.	.																									.	.
Query Sequence		Q	L	A	.	.	.	.	Q	E	G	L	G	I	E	A	Q	A	R	Q	A	R	Y	Q	A	F	A	R	T	L	L	P	.	.	G	E	V	L	V	T	A	Q	H	L	D	D	Q	C	E	T	F	L	L	A	L	K	R	G	S	G	P	A	G	L	S	A	M	A	E	V	S	E	F	A	G	T	R	L	I	R	P
Query Conservation					.	.	.	.																									.	.
Alig confidence					.	.	.	.																									.	.
Template Conservation
Template Sequence		D	V	P	A	F	Q	R	S	A	G	L	G	A	Q	E	A	A	R	I	C	R	Y	R	F	F	A	E	L	M	E	K	H	Q	A	G	Y	V	A	V	G	H	H	G	D	D	Q	V	E	T	I	L	M	R	L	V	R	G	S	T	S	K	G	Y	A	G	I	P	V	K	R	P	F	H	G	G	Y	L	I	R	P
Template Known Secondary structure			T					T	T	T	T			S																		T	T	T																											S	S	S	T	T		S		S					S	S	S					G
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	R	T	R	G	E	L	V	Q	W	A	R	Q	Y	D	L	R	W	I	E	D	E	S	N	Q	D	D	S	Y	D	R	N	F	L	R	L	R	V	V	P	L	L	Q	Q	R	W	P	H	F	A	E	A	T	A	R	S	A	A	L	C	A	E	Q	E	S	L	L	D	E	L	L	A	D	D	L	A	H	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	V	S	R	A	E	I	E	A	Y	C	R	Q	M	G	L	S	P	R	C	D	P	S	N	E	K	D	D	Y	T	R	N	R	F	R	H	H	I	V	P	L	L	R	Q	E	N	P	R	L	H	E	R	F	Q	Q	Y	S	E	M	M	A	E	D	E	Q	F	L	E	E	L	A	A	D	A	L	N	K	V
Template Known Secondary structure		G	G	G	S												T			S	S		S		T	T				T	T	S								T										S						T																								T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		235	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270				.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.																																.	.	.
Query SS confidence							.	.	.																																.	.	.
Query Sequence		Q	S	P	Q	G	.	.	.	T	L	Q	I	V	P	M	L	A	M	S	D	A	R	R	A	A	I	I	R	R	W	L	A	G	Q	N	A	P	M	P	.	.	.	S	R	D	A	L	V	R	I	W	Q	E	V	A	L	A	R	E	D	A	S	P	C	L	R	L	G	A	F	E	I	R	R	Y	Q	S	Q	L	W
Query Conservation							.	.	.																																.	.	.
Alig confidence							.	.	.																																.	.	.																																		.
Template Conservation																																																																													.
Template Sequence		M	E	K	Q	H	R	D	A	A	L	S	I	G	P	F	L	E	L	P	R	P	L	Q	R	R	V	L	Q	L	L	L	L	R	L	Y	G	G	V	P	P	T	L	T	S	V	H	I	G	H	I	L	M	L	C	E	R	G	R	P	S	G	M	I	D	L	P	K	G	L	K	V	I	R	S	Y	.	D	R	C	L
Template Known Secondary structure					S	S	S	S											S																T	T	S			T	T																	S		S							S	T	T							T	.	T
Template Predicted Secondary structure																																																																													.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.												.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.		.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence		W	I	K	S	V	T	G	Q	S	E	N	I	V	P	W	Q	T	W	L	Q	P	L	E	L	P	A	G	L	G	S	V	Q	L	.	.	.	.	.	.	.	.	.	.	.	N	A	G	G	D	I	R	P	P	R	A	D	E	A	V	S	V	R	F	K	A	P	G	L	L	H	.	I	V	G	R	N	G	G	R	K
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence		F	T	F	D	A	E	S	G	E	K	G	Y	W	F	E	L	P	V	P	A	L	L	P	L	P	N	G	Y	A	I	I	S	E	F	G	E	H	Y	P	R	K	Q	A	G	N	D	W	F	V	V	D	P	A	S	V	S	L	P	L	R	V	R	T	R	R	R	G	D	R	M	V	L	K	G	T	G	G	T	K	K
Template Known Secondary structure				S	S														S	S						T	T	T									S	S				S		S		S	S						S	T	T	S		S									T	T						S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.			.	.	.	.	.	.	.
Predicted Secondary structure																									.																							.	.
Query SS confidence																									.																							.	.
Query Sequence		L	K	K	I	W	Q	E	L	G	V	P	P	W	L	R	D	T	T	P	L	L	F	Y	.	G	E	T	L	I	A	A	A	G	V	F	V	T	Q	E	G	V	A	E	G	E	N	.	.	G	V	S	F	V	W	Q
Query Conservation																									.																							.	.
Alig confidence																									.																							.	.
Template Conservation
Template Sequence		L	K	E	I	F	I	E	A	K	I	P	R	M	E	R	D	R	W	P	I	V	E	D	A	D	G	R	I	L	W	V	P	G	L	K	K	S	A	F	E	A	Q	N	R	G	Q	A	R	Y	I	L	L	Q	Y	Q
Template Known Secondary structure									T	T															T	T							T	T	T				S		S			S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460