Job Description P52097 Confidence 48.67% Date Thu Jan 5 12:05:18 GMT 2012 Rank 129 Aligned Residues 85 % Identity 11% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	V	A	F	S	G	G	L	D	S	T	V	L	L	H	Q	L	V	Q	W	R	T	E	N	P	G	V	A	L	R	A	I	H	V	H	H	G	L	S	A	N	A	D	A	W	V	T	H	C	E	N	V	C	Q	Q	W	Q	V	P	L	V	V	E	R	V	Q	L	A	Q	E	G	L	G	I	E	A	Q	A	R
Query Conservation
Alig confidence																										.	.												.	.	.	.																						.	.	.	.	.
Template Conservation																										.	.												.	.	.	.																						.	.	.	.	.
Template Sequence		M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	.	.	G	W	K	T	C	L	I	C	A	D	T	.	.	.	.	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	Y	.	.	.	.	.	G	S	Y	T	E	M	D	P	V	I	I	A	S
Template Known Secondary structure						S	T	T	S	S															T	.	.	T											.	.	.	.	S	S	S														T					.	.	.	.	.						S
Template Predicted Secondary structure																										.	.												.	.	.	.																						.	.	.	.	.
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	R	Y	Q	A	F	A	R	T	L	L	P	G	E	V	L	V	T
Query Conservation
Alig confidence								.	.	.
Template Conservation								.	.	.
Template Sequence		E	G	V	E	K	F	.	.	.	K	N	E	N	F	E	I	I	I	V
Template Known Secondary structure								.	.	.			T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		174	.	.	.	.	.				180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions