Job Description P52097 Confidence 99.80% Date Thu Jan 5 12:05:18 GMT 2012 Rank 18 Aligned Residues 171 % Identity 16% Template c2hmaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:probable trna (5-methylaminomethyl-2-thiouridylate)- PDBTitle: the crystal structure of trna (5-methylaminomethyl-2-thiouridylate)-2 methyltransferase trmu from streptococcus pneumoniae Resolution 2.41 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																	.	.																										.	.	.	.	.	.
Query SS confidence																																																	.	.																										.	.	.	.	.	.
Query Sequence		L	T	S	R	Q	I	L	V	A	F	S	G	G	L	D	S	T	V	L	L	H	Q	L	V	Q	W	R	T	E	N	P	G	V	A	L	R	A	I	H	V	H	H	G	L	S	A	N	.	.	A	D	A	W	V	T	H	C	E	N	V	C	Q	Q	W	Q	V	P	L	V	V	E	R	V	Q	.	.	.	.	.	.
Query Conservation																																																	.	.																										.	.	.	.	.	.
Alig confidence																											.	.	.	.	.																		.	.																										.	.	.	.	.	.
Template Conservation																											.	.	.	.	.
Template Sequence		N	S	K	T	R	V	V	V	G	X	S	G	G	V	D	S	S	V	T	A	L	L	L	K	E	.	.	.	.	.	Q	G	Y	D	V	I	G	I	F	X	K	N	W	D	D	T	D	C	T	A	T	E	D	Y	K	D	V	V	A	V	A	D	Q	I	G	I	P	Y	Y	S	V	N	F	E	K	E	Y	W	D	R
Template Known Secondary structure		G	G	G	S								S	S													.	.	.	.	.	T	T																																	T
Template Predicted Secondary structure																											.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.						.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
											82	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.													.															.	.																			.															.	.
Query SS confidence		.	.	.	.	.	.	.	.	.													.															.	.																			.															.	.
Query Sequence		.	.	.	.	.	.	.	.	.	L	A	Q	E	G	L	G	I	E	A	Q	A	.	R	Q	A	R	Y	Q	A	F	A	R	T	L	L	P	.	.	G	E	V	L	V	T	A	Q	H	L	D	D	Q	C	E	T	F	L	.	L	A	L	K	R	G	S	G	P	A	G	L	S	A	.	.	M	A	E	V	S	E	F
Query Conservation		.	.	.	.	.	.	.	.	.													.															.	.																			.															.	.
Alig confidence		.	.	.	.	.	.	.	.	.													.															.	.																			.															.	.
Template Conservation
Template Sequence		V	F	E	Y	F	L	A	E	Y	R	A	G	R	T	P	N	P	D	V	X	C	N	K	E	I	K	F	K	A	F	L	D	Y	A	I	T	L	G	A	D	Y	V	A	T	G	H	Y	A	R	V	A	R	D	E	D	G	T	V	H	X	L	R	G	V	D	N	G	K	D	Q	T	Y	F	L	S	Q	L	S	Q	E
Template Known Secondary structure		T										T	T													T	T	T	T								T	T	T		S							S							S	S	S								S	S	T	T	T			G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	T	R	L	I	R	P	L	L	A	R	T	R	G	E	L	V	Q	W	A	R	Q	Y	D	L	R	W	I	E	D	E	S	N	Q	D	D	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	Q	K	T	X	F	P	L	G	H	L	E	K	P	E	V	R	R	L	A	E	E	A	G	L	S	T	A	K	K	K	D	S	T	G	I	C	F
Template Known Secondary structure				T	T				T	T	T	T													T	T		T	T	T	T						S		T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions