Job Description P08401 Confidence 99.72% Date Thu Jan 5 11:01:29 GMT 2012 Rank 24 Aligned Residues 109 % Identity 17% Template c1mx0D_ PDB info PDB header:isomerase Chain: D: PDB Molecule:type ii dna topoisomerase vi subunit b; PDBTitle: structure of topoisomerase subunit Resolution 2.30 Å

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		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.				.	.	390	.	.	.	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																											.	.	.									.	.	.																																							.	.	.
Query SS confidence																											.	.	.									.	.	.																																							.	.	.
Query Sequence		A	E	P	A	L	L	E	Q	A	L	G	N	L	L	D	N	A	I	D	F	T	P	E	S	G	.	.	.	C	I	T	L	S	A	E	V	.	.	.	D	Q	E	H	V	T	L	K	V	L	D	T	G	S	G	I	P	D	Y	A	L	S	R	I	F	E	R	F	Y	S	L	P	R	A	N	G	Q	K	.	.	.
Query Conservation																											.	.	.									.	.	.																																							.	.	.
Alig confidence																											.	.	.									.	.	.																																							.	.	.
Template Conservation
Template Sequence		N	P	A	R	A	L	Y	Q	T	V	R	E	L	I	E	N	S	L	D	A	T	D	V	H	G	I	L	P	N	I	K	I	T	I	D	L	I	D	D	A	R	Q	I	Y	K	V	N	V	V	D	N	G	I	G	I	P	P	Q	E	V	P	N	A	F	G	R	V	L	Y	S	S	K	Y	V	N	R	Q	T	R	G
Template Known Secondary structure		S																			T	T	G	G	G	T														T	T	T	T										S					G	G	G							S	S	S			S			S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		S	S	G	L	G	L	A	F	V	S	E	V	A	R	L	F	N	G	E	.	V	T	L	R	N	V	Q	E	G	G	V	L	A	S	L	R	L	H	R
Query Conservation																					.
Alig confidence																					.
Template Conservation
Template Sequence		X	Y	G	L	G	V	K	A	A	V	L	Y	S	Q	X	H	Q	D	K	P	I	E	I	E	T	S	P	V	N	S	K	R	I	Y	T	F	K	L	K
Template Known Secondary structure			S	S																									T	T		S
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions