Job Description P0AGL5 Confidence 98.74% Date Thu Jan 5 11:29:26 GMT 2012 Rank 67 Aligned Residues 148 % Identity 12% Template c2e3rB_ PDB info PDB header:lipid transport Chain: B: PDB Molecule:lipid-transfer protein cert; PDBTitle: crystal structure of cert start domain in complex with c18-2 ceramide (p1) Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure															.																																																	.	.	.	.												.	.	.
Query SS confidence															.																																																	.	.	.	.												.	.	.
Query Sequence		E	I	V	M	P	Q	I	S	R	T	A	L	V	.	P	Y	S	A	E	Q	M	Y	Q	L	V	N	D	V	Q	S	Y	P	Q	F	L	P	G	C	T	G	S	R	I	L	E	S	T	P	G	Q	M	T	A	A	V	D	V	S	K	A	G	I	.	.	.	.	S	K	T	F	T	T	R	N	Q	L	T	.	.	.
Query Conservation															.																																																	.	.	.	.												.	.	.
Alig confidence															.																																																	.	.	.	.												.	.	.
Template Conservation
Template Sequence		G	I	V	L	D	P	L	K	A	T	H	A	V	K	G	V	T	G	H	E	V	C	N	Y	F	W	N	V	D	V	R	N	D	W	E	T	T	I	E	N	F	H	V	V	E	T	L	A	D	N	A	I	I	I	Y	Q	T	H	K	R	V	W	P	A	S	Q	R	D	V	L	Y	L	S	V	I	R	K	I	P	A
Template Known Secondary structure		T														T													G	G	G							S												T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.
						83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.																.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		.	.	.	.	S	N	Q	S	I	L	M	N	L	V	D	G	P	F	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	G	G	W	K	F	T	P	L	S	.	.	Q	E	A	C	R	I	E	F	H	L	D	F	E	F	T	N	K	L	I	E	L	A	F	G	R	V	F	K	E	L	A	A
Query Conservation		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence		.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		L	T	E	N	D	P	E	T	W	I	V	C	N	F	S	V	D	H	D	S	A	P	L	N	N	R	C	V	R	A	K	I	N	V	A	M	I	C	Q	T	L	V	S	E	I	S	R	D	N	I	L	C	K	I	T	Y	V	A	N	V	N	P	G	G	W	A	P	A	S	V	L	R	A	V	A	K	R	E	Y	P
Template Known Secondary structure		S	S	T	T	S														T	T	S				S	S	S																				G	G	G														S	S
Template Predicted Secondary structure
Template SS confidence
		492	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	M	V	Q	A	F	T	V	R	A	K	E	V	Y	S	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	L	K	R	F	T	S	Y	V	Q	E	K	T	A	G	K
Template Known Secondary structure																T	T	S
Template Predicted Secondary structure
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions