Job Description P0AGL5 Confidence 98.97% Date Thu Jan 5 11:29:26 GMT 2012 Rank 56 Aligned Residues 139 % Identity 9% Template c1jssB_ PDB info PDB header:lipid binding protein Chain: B: PDB Molecule:cholesterol-regulated start protein 4; PDBTitle: crystal structure of the mus musculus cholesterol-regulated2 start protein 4 (stard4). Resolution 2.20 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.
Query Sequence		M	P	Q	I	S	R	T	A	L	V	P	Y	S	A	E	Q	M	Y	Q	L	V	N	D	V	Q	S	Y	P	Q	F	L	P	G	C	T	G	S	R	I	L	E	S	T	P	G	Q	M	T	A	A	V	D	V	S	K	A	G	I	S	.	.	.	.	.	.	K	T	F	T	T	R	N	Q	L	T	S	N	Q	S	I
Query Conservation																																																													.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	L	Y	K	A	Q	G	V	M	D	D	V	V	N	N	V	I	D	H	I	R	P	G	P	W	R	L	D	W	D	R	L	M	T	S	L	D	V	L	E	H	F	E	E	N	C	C	V	M	R	Y	T	T	A	G	Q	L	L	N	I	I	S	P	R	E	F	V	D	F	S	Y	T	V	G	Y	E	E	G	L
Template Known Secondary structure		S										S	S										S	S	S	T	T						S	S												T	T												S	T	T	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.											.	100	.	.	.	.	.	.	.	.	.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.													.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.													.	.
Query Sequence		L	M	N	L	V	D	G	P	F	K	K	.	.	.	.	.	.	.	.	.	.	L	I	G	G	W	K	F	T	P	L	S	Q	.	.	E	A	C	R	I	E	F	H	L	D	F	E	F	T	N	K	L	I	E	L	A	F	G	R	V	F	K	E	L	A	A	N	M	V	Q	A	F	T	V	R	A	K
Query Conservation													.	.	.	.	.	.	.	.	.	.													.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation
Template Sequence		L	S	C	G	V	S	V	E	W	S	E	T	R	P	E	F	V	R	G	Y	N	H	P	C	G	W	F	C	V	P	L	K	D	S	P	S	Q	S	L	L	T	G	Y	I	Q	T	D	L	R	G	M	I	P	Q	S	A	V	D	T	A	M	A	S	T	L	A	N	F	Y	S	D	L	R	K	G	L	R
Template Known Secondary structure															T	T	S							S									T	T		S	S														S	S																									T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions