Job Description P13482 Confidence 72.53% Date Thu Jan 5 11:33:37 GMT 2012 Rank 30 Aligned Residues 241 % Identity 18% Template c3k7xA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0763 protein; PDBTitle: crystal structure of the lin0763 protein from listeria2 innocua. northeast structural genomics consortium target3 lkr23. Resolution 1.89 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.								.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.			.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.																					.	.	.					.	.
Query SS confidence																									.	.	.	.	.	.	.																					.	.	.					.	.
Query Sequence		P	G	G	R	F	R	E	V	Y	Y	W	D	S	Y	F	T	M	L	G	L	A	E	S	.	.	.	.	.	.	.	G	H	W	D	K	V	A	D	M	V	A	N	F	A	H	E	I	D	T	Y	.	.	.	G	H	I	P	.	.	N	G	N	R	S	Y	Y	L	S	R	S	Q	P	P	F	F	A	L	M	V	E
Query Conservation																									.	.	.	.	.	.	.																					.	.	.					.	.
Alig confidence																									.	.	.	.	.	.	.																					.	.	.					.	.
Template Conservation
Template Sequence		N	G	G	T	L	I	H	D	F	Y	D	D	X	L	W	N	A	L	A	A	Y	R	L	Y	K	A	T	G	K	S	I	Y	L	E	D	A	Q	L	V	W	Q	D	L	V	D	T	G	W	N	D	I	X	G	G	G	F	A	W	R	R	P	Q	X	Y	Y	K	N	T	P	V	N	A	P	F	I	I	L	S	C	W
Template Known Secondary structure		T	T	S	S	S			S	B																																						T	B		S	G	G	G	S		B				T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	Q	H	E	G	D	A	A	L	K	Q	Y	L	P	Q	M	Q	K	E	Y	A	Y	W	M	D	G	V	E	N	L	Q	A	G	Q	Q	E	K	R	V	V	K	L	Q	D	G	T	L	L	N	R	Y	W	D	D	R	D	T	P	R	P	E	S	W	V	E	D	I	A	T	A	K	S	N	P	N	R	P	A
Query Conservation
Alig confidence				.							.	.	.																	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.							.	.	.																	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	.	N	E	L	N	E	T	.	.	.	K	Y	L	E	W	A	X	K	T	Y	E	W	Q	T	K	V	.	L	V	R	E	D	G	F	V	E	D	G	I	N	R	L	E	D	G	T	I	D	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.							.	.	.																	.		B		T	T	S		B						T	T	S	S	S		B		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.							.	.	.																	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.		.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	I	Y	R	D	L	R	S	A	A	A	S	G	W	D	F	S	S	R	W	M	D	N	P	Q	Q	L	N	T	L	R	T	T	S	I	V	P	V	D	L	N	S	L	M	F	K	M	E	K	I	L	A	R	A	S	K	A	A	G	D	N	A	M	A	N	Q	Y	E	T	L	A	N	A	R	Q	K	G	I	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	K	F	T	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	V	Y	I	G	A	N	L	E	L	Y	R	I	T	K	E	A	I	.	.	.	.	Y	L	D	T	A	N	K	T	A	A	I	S	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.
Template SS confidence
																209	210	.	.	.	.																									.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																																																									.	.	.
Query SS confidence																																																									.	.	.
Query Sequence		K	Y	L	W	N	D	Q	Q	G	W	Y	A	D	Y	D	L	K	S	H	K	V	R	N	Q	L	T	A	A	A	L	F	P	L	Y	V	N	A	A	A	K	D	R	A	N	K	M	A	T	A	T	K	T	H	L	L	.	.	.	Q	P	G	G	L	N	T	T	S	V	K	S	G	Q	Q	W	D	A	P	N	G	W
Query Conservation																																																									.	.	.
Alig confidence						.	.																																																		.	.	.																				.
Template Conservation						.	.																																																																								.
Template Sequence		K	E	L	T	.	.	E	D	G	I	F	K	D	E	G	N	G	G	D	E	G	L	F	K	G	I	F	Y	R	Y	F	T	D	L	I	E	E	T	A	N	K	T	Y	R	D	F	V	L	N	S	C	Q	I	L	V	E	N	A	K	L	D	G	Y	L	L	X	G	X	N	W	K	E	K	P	S	G	K	.	I	P
Template Known Secondary structure						.	.		T	T							S	S	S	G	G	G	G																	T																						T	T						S		S	S	S		S		S		.
Template Predicted Secondary structure						.	.																																																																								.
Template SS confidence
		247	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.		.	.
		454	.	.	.				.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		A	P	L	Q	.	.	.	W	V	A	T	E	G	L	Q	N	Y
Query Conservation						.	.	.
Alig confidence						.	.	.
Template Conservation
Template Sequence		Y	S	A	E	L	S	G	X	I	A	L	E	X	A	A	K	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions