Job Description P13482 Confidence 99.90% Date Thu Jan 5 11:33:37 GMT 2012 Rank 5 Aligned Residues 297 % Identity 17% Template c2okxB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:rhamnosidase b; PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a Resolution 1.90 Å

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		153	.	.	.	.	.	.			160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.			.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.
Predicted Secondary structure									.	.									.																																							.	.																				.
Query SS confidence									.	.									.																																							.	.																				.
Query Sequence		F	R	E	V	Y	Y	W	.	.	D	S	Y	F	T	M	L	G	.	L	A	E	S	G	H	W	D	K	V	A	D	M	V	A	N	F	A	H	E	I	D	T	Y	G	H	I	P	N	G	N	R	S	Y	Y	L	S	R	.	.	S	Q	P	P	F	F	A	L	M	V	E	L	L	A	Q	H	E	G	D	.	A	A
Query Conservation									.	.									.																																							.	.																				.
Alig confidence									.	.									.																																							.	.																				.
Template Conservation
Template Sequence		S	Y	E	Q	V	F	W	V	G	D	S	R	N	E	A	L	V	N	Y	Y	V	F	G	E	T	E	I	V	E	R	C	L	N	L	V	P	G	S	A	D	E	T	P	L	Y	L	D	Q	V	P	S	A	W	S	S	V	I	P	N	W	T	F	F	W	I	L	A	C	R	E	Y	A	A	H	T	G	N	E	A	F
Template Known Secondary structure		T	T	T				B															T													G	G	G	G	T	T	T		T	T			S	B	S	S		S																								T
Template Predicted Secondary structure
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	Q	Y	L	P	Q	M	Q	K	E	Y	A	Y	W	M	D	G	V	E	N	L	Q	A	G	Q	Q	E	K	R	V	V	K	L	Q	D	G	T	L	L	N	R	Y	W	D	D	R	D	T	P	R	P	E	S	W	V	E	D	I	A	T	A	K	S	N	P	N	R	P	A	T	E	I	Y	R	D	L	R	S	A
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	R	I	W	P	A	V	K	H	T	L	T	H	Y	L	E	H	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																		T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	G	W	D	F	S	S	R	W	M	D	N	P	Q	Q	L	N	T	L	R	T	T	S	I	V	P	V	D	L	N	S	L	M	F	K	M	E	K	I	L	A	R	A	S	K	A	A	G	D	N	A	M	A	N	Q	Y	E	T	L	A	N	A	R	Q	K	G	I	E	K	Y	L	W	N	D	Q	Q	G	W
Query Conservation
Alig confidence		.														.
Template Conservation		.														.
Template Sequence		.	D	S	G	L	L	N	M	A	G	W	N	L	L	.	D	W	A	P	I	D	Q	P	N	E	G	I	V	T	H	Q	N	L	F	L	V	K	A	L	R	D	S	R	A	L	A	A	A	A	G	A	T	E	E	A	D	A	F	A	A	R	A	D	L	L	A	E	T	I	N	A	V	L	W	D	E	E	K	R	A
Template Known Secondary structure		.	T	T	S	S	B				S					.		S	S	S					S																										T		G	G	G	G																		S			T	T	T	T
Template Predicted Secondary structure		.														.
Template SS confidence
			670	.	.	.	.	.	.	.	.	.	680	.	.		.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Y	A	D	Y	D	L	K	S	H	K	V	R	N	Q	L	T	.	A	A	A	L	F	P	L	Y	V	N	A	A	A	K	D	R	A	N	K	M	A	T	A	T	K	T	H	L	L	Q	P	G	G	L	N	T	T	S	V	K	S	G	Q	Q	W	D	A	P	N	G	W	A	P	L	Q	W	V	A	T	E	G	L	Q
Query Conservation																		.
Alig confidence																		.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	I	D	C	I	H	A	D	G	R	R	S	D	V	Y	S	M	Q	T	Q	V	V	A	Y	L	C	G	V	A	Q	G	E	R	E	A	V	I	E	G	Y	L	S	S	P	P	P	A	F	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	S	P	F	M	S	F	F	Y	Y	E	A	L	E
Template Known Secondary structure				S				T	T	S		B					B										T	T		S		T												S			T	T	S	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.																.	.	800	.	.	.	.	.	.	.	.	.	810	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		N	Y	G	Q	K	E	V	A	M	D	I	S	W	H	.	F	L	T	N	V	Q	H	T	Y	D	R	E	K	K	L	V	E	K	Y	D	V	S	T	T	G	T	G	G	G	G	G	E	Y	P	L	Q	D	G	F	G	W	T	N	G	V	T	L	K	M	L	D
Query Conservation																.
Alig confidence																.									.	.	.																											.
Template Conservation																									.	.	.																											.
Template Sequence		K	A	G	R	Q	T	L	M	L	D	D	I	R	R	N	Y	G	Q	M	L	R	Y	D	.	.	.	A	T	T	C	W	E	M	Y	P	N	F	A	E	N	R	S	N	P	D	M	L	T	R	S	H	C	.	H	A	W	S	A	A	P	G	Y	F	L	G	S
Template Known Secondary structure			T	T													T						T	T	.	.	.		S	S			S	S		S	S			T	T	S	S	S	T	T	S	S		S		S		.		G	G	G		T
Template Predicted Secondary structure																									.	.	.																											.
Template SS confidence
		813	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.				.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.		.	.	.	.	.	.	.	.	870	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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