Job Description P76658 Confidence 100.00% Date Thu Jan 5 12:25:18 GMT 2012 Rank 30 Aligned Residues 284 % Identity 17% Template d2dcna1 SCOP info Ribokinase-like Ribokinase-like Ribokinase-like Resolution 2.25

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		A	G	V	M	V	V	G	D	V	M	L	D	R	Y	W	Y	G	P	T	S	R	I	S	P	E	A	P	V	P	V	V	K	V	N	T	I	E	E	R	P	G	G	A	A	.	N	V	A	M	N	I	A	S	L	G	A	N	A	R	L	V	G	L	T	G	I	D	D	A	A	R	A	L	S	K	S	L	A	D	V
Query Conservation																																														.
Alig confidence														.	.	.	.	.	.	.	.	.																								.
Template Conservation														.	.	.	.	.	.	.	.	.
Template Sequence		A	K	L	I	T	L	G	E	I	L	I	E	.	.	.	.	.	.	.	.	.	F	N	A	L	S	P	G	P	L	R	H	V	S	Y	F	E	K	H	V	A	G	S	E	A	N	Y	C	V	A	F	I	K	Q	G	N	E	C	G	I	I	A	K	V	G	D	D	E	F	G	Y	N	A	I	E	W	L	R	G	Q
Template Known Secondary structure								S						.	.	.	.	.	.	.	.	.				S	S	S	S		G	G	G																						T	T											S	S													T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.										.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure											.																.	.	.	.
Query SS confidence											.																.	.	.	.
Query Sequence		N	V	K	C	D	F	V	S	V	.	P	T	H	P	T	I	T	K	L	R	V	L	S	R	N	.	.	.	.	Q	Q	L	I	R	L	D	F	E	E	G	F	E	G	V	D	P	Q	P	L	H	E	R	I	N	Q	A	L	S	S	I	G	A	L	V	L	S	D	Y	A	K	G	A	L	A	S	V	Q	Q	M	I
Query Conservation											.																.	.	.	.
Alig confidence											.																.	.	.	.																						.	.	.
Template Conservation																																																				.	.	.
Template Sequence		G	V	D	V	S	H	M	K	I	D	P	S	A	P	T	G	I	F	F	I	Q	R	H	Y	P	V	P	L	K	S	E	S	I	Y	Y	R	K	G	S	A	G	S	K	L	S	P	E	D	V	D	.	.	.	E	E	Y	V	K	S	A	D	L	V	H	S	S	G	I	T	L	A	I	S	S	T	A	K	E	A	V
Template Known Secondary structure		T		B		T	T					T	T	S										S		S	S	T	T									T	T		T	G	G	G			G	G	G			.	.	.					T	T		S											S
Template Predicted Secondary structure																																																				.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.															.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	A	R	K	A	G	V	P	V	L	I	D	P	K	G	T	D	F	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	G	A	T	L	L	T	P	N	L	S	E	F	E	A	V	V	G	K	C	K	T	E	E	E	I	V	E	R	G	M	K	L	I	A	D	Y	E	L	S	A	L	L	V
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.											.
Template Conservation																																																											.	.	.	.	.											.
Template Sequence		Y	K	A	F	E	I	A	S	N	R	S	F	D	T	N	I	R	L	K	L	W	S	A	E	E	A	K	R	E	I	L	K	L	L	S	K	F	H	L	K	F	L	I	T	D	T	D	D	S	K	I	I	L	G	E	S	D	.	.	.	.	.	P	D	K	A	A	K	A	F	S	D	.	Y	A	E	I	I	V	M
Template Known Secondary structure									S	S									T	T	T	S																																	S				.	.	.	.	.									T	T	.	T
Template Predicted Secondary structure																																																											.	.	.	.	.											.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.						.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		T	R	S	E	Q	G	M	S	L	L	Q	P	G	K	A	P	L	H	M	P	T	Q	A	Q	E	V	Y	D	V	T	G	A	G	D	T	V	I	G	V	L	A	A	T	L	A	A	G	N	S	L	E	E	A	C	F	F	A	N	A	A	A	G	V	V	V	G	K	L	G	T	S	T	.	.	V	S	P	I	E	L
Query Conservation																																																																										.	.
Alig confidence													.																																																													.	.
Template Conservation													.
Template Sequence		K	L	G	P	K	G	A	I	V	Y	Y	.	D	G	K	K	Y	Y	S	S	G	Y	Q	V	P	V	E	D	V	T	G	A	G	D	A	L	G	G	T	F	L	S	L	Y	Y	K	G	F	E	M	E	K	A	L	D	Y	A	I	V	A	S	T	L	N	V	M	I	R	G	D	Q	E	N	L	P	T	T	K	D	I
Template Known Secondary structure					T	T							.	T	T													S			T	T														T	T	T																		T	T	S	S	S	S	S	T	T
Template Predicted Secondary structure													.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		309	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	F	L	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions