 |
Job Description | P76658 | Confidence | 73.24% | Date | Thu Jan 5 12:25:18 GMT 2012 |
Rank | 127 | Aligned Residues | 102 |
% Identity | 14% | Template | c3jxeB_ |
PDB info |
PDB header:ligase | Chain: B: PDB Molecule:tryptophanyl-trna synthetase; |
PDBTitle: crystal structure of pyrococcus horikoshii tryptophanyl-trna2 synthetase in complex with trpamp
|
Resolution | 3.00 Å |
|
 |
  |   |
295 | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | |
|
|
. | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
| . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | G | K | L | G | T | S | T | V | S | P | I | E | L | E | N | A | V | R | G | R | A | D | T | G | F | G | V | M | T | E | E | . |
. |
. |
. |
. |
. |
E | L | K | L | A | V | A | A | A | R | K | R | G | E | K | V | V | M | T | N | G | V | F | D | . |
. |
. |
I | L | H | A | G | H | V | S | Y | L | A | N | A | R | K |
Query Conservation |   |
|   |   |   |
|
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |
|
| . | . | . |   |   |
|   |
|
|   |   |   |
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |   |
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |
|   |
|   |   |
|
|
| . |
| . |   |   |
|
|
|   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |
Template Sequence |   |
I | K | H | F | G | T | S | P | L | T | E | D | L | L | E | K | T | A | E | L | T | K | S | E | L | P | I | F | F | R | R | K | F | F | F | S | H | R | D | Y | D | L | I | L | K | D | Y | E | E | G | R | G | F | F | L | Y | T | . |
G | . |
R | G | P | S | G | P | M | H | I | G | H | I | I | P | F | F | A | T | K | W |
Template Known Secondary structure |   |
 |  |  |  | T |
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  | T | T | S |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  | . |  | . |  |
|
| S | S |
|
| B |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . |
| . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
. | |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
  |
  |   |
366 | |
|
|
. | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . |
Predicted Secondary structure |   |
 | . | . | . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | . |
. |
. |
G | D | R | L | I | V | A | V | N | S | D | A | S | T | K | R | L | K | G | D | S | R | P | V | N | P | L | E | Q | R | M | I | V | L | G | A |
Query Conservation |   |
  | . | . | . |
|
|   |
|
|
|   |
|   |   |
|   |   |   |   |   |   |
|
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
Alig confidence |   |
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
|   |   |   |   |
|   |
|   |
|   |   |
|   |   | . | . | . | . |   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |
Template Sequence |   |
L | Q | E | K | F | G | V | N | L | Y | I | Q | I | T | D | D | E | K | F | L | . |
. |
. |
. |
F | K | E | N | L | T | F | D | D | T | K | R | W | A | Y | D |
Template Known Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |
|  |  |  |  |  |  | . | . | . | . |  |
| S | S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
|
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|