Return to main results Retrieve Phyre Job Id

Job DescriptionP76658
Confidence100.00%DateThu Jan 5 12:25:18 GMT 2012
Rank17Aligned Residues295
% Identity19%Templatec3in1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50.... .....60.........70.........80.........90
Predicted Secondary structure 



















.








Query SS confidence 










































.



































Query Sequence  GVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAA. NVAMNIASLGANARLVGLTGIDDAARALSKSLADVN
Query Conservation   




   

    
   

 

 
 

          



.


  

 

  
 


 

 
  
  
   
   
Alig confidence 




























...










.



































Template Conservation   

 

   

                  ...       

   


  

 

  
  
  

 
  
  
   
   
Template Sequence  DVICIGAAIVDIPLQPVSKNIFDVDSYPL. . . ERIAXTTGGDAINEATIISRLGHRTALXSRIGKDAAGQFILDHCRKEN
Template Known Secondary structure 
S


SSGGGSS



...S



STT

SST
Template Predicted Secondary structure 











...










Template SS confidence 















































































   5....10.........20.........30... ......40.........50.........60.........70.........80.
 
   91....... .100.........110.........120.........130.........140.........150. ........160......
Predicted Secondary structure 


.
























...




Query SS confidence 







.




















































. . .














Query Sequence  VKCDFVSV. PTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSD. . . YAKGALASVQQMIQL
Query Conservation 

   
  .    
                                     
   
 
 

 ...               
Alig confidence 







.





































..












...














Template Conservation 
    
       
                                 ..                               
Template Sequence  IDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLNIDDVDF. . ARFSQAKLLSLASIFNSPLLDGKALTEIFTQ
Template Known Secondary structure 
B
TTTTS


TTS


TTS

GGG

G..GGGGG
STTSTTS
Template Predicted Secondary structure 























..












Template SS confidence 















































































   82.......90.........100.........110.........120........ .130.........140.........150.........
 
   167..170.........180. ........190.........200.........210.........220.........230........
Predicted Secondary structure 







........





















Query SS confidence 














. . . . . . . .
























































Query Sequence  ARKAGVPVLIDPKGT. . . . . . . . DFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMS
Query Conservation 
      
  
    ........        
 
 

  
   
 
           
   
   
   



 
  

 
Alig confidence 














........

























.....

























Template Conservation            
                
   
       
         .....       
       



 
  
  
Template Sequence  AKARQXIICADXIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKET. . . . . LDEIADCFLACGVKTVVIKTGKDGCF
Template Known Secondary structure  TTT



SSS

GGGGTT
S
B


S.....TT
S
GGG
Template Predicted Secondary structure 
















.....





Template SS confidence 















































































   160.........170.........180.........190.........200........ .210.........220.........230....
 
   239240.........250.........260.........270.........280.........290.........300.. .......310......
Predicted Secondary structure 



























..



Query SS confidence 































































. .













Query Sequence  LLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTST. . VSPIELENAVRGRA
Query Conservation             

  
 










 



  
  
    

   
 



  
   

  ..    

   
    
Alig confidence 































































..













Template Conservation                   








 
 

    
  
     

  
   

  
   
     
   

   
   
Template Sequence  IKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNLRECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYE
Template Known Secondary structure  TT


SS


S

TTTT

TSSSSSSS
SSST

Template Predicted Secondary structure 































Template SS confidence 















































































   235....240.........250.........260.........270.........280.........290.........300.........310....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions