Job Description P76658 Confidence 100.00% Date Thu Jan 5 12:25:18 GMT 2012 Rank 28 Aligned Residues 274 % Identity 23% Template c3i3yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Resolution 2.15 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	M	V	V	G	D	V	M	L	D	R	Y	W	Y	G	P	T	S	R	I	S	P	E	A	P	V	P	V	V	K	V	N	T	I	E	E	R	P	G	G	A	A	N	V	A	M	N	I	A	S	L	G	A	N	A	R	L	V	G	L	T	G	I	D	D	A	A	R	A	L	S	K	S	L	A	D	V	N	V
Query Conservation
Alig confidence																.	.						.
Template Conservation																.	.						.
Template Sequence		R	V	Y	V	T	G	N	I	T	V	D	E	T	W	.	.	S	I	P	D	I	.	P	K	K	G	A	S	I	H	G	V	K	V	S	Q	D	I	G	G	K	G	A	N	Q	A	I	I	L	S	R	C	G	I	E	T	R	L	I	A	A	T	G	N	D	S	N	G	A	W	I	R	Q	Q	I	K	N	E	P	L
Template Known Secondary structure																.	.			S	S		.			T	T																										T	T											S	S											T	T	S	S
Template Predicted Secondary structure																.	.						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.			.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	C	D	F	V	S	V	P	T	H	P	T	I	T	K	L	R	V	L	S	R	N	Q	Q	L	I	R	L	D	F	E	E	G	F	E	G	V	D	P	Q	P	L	H	E	R	I	N	Q	A	L	S	S	I	G	A	L	V	L	S	D	Y	A	K	G	A	L	A	S	V	Q	Q	M	I	Q	L	A	R	K	A	G
Query Conservation
Alig confidence																													.	.	.	.																																	.	.
Template Conservation																													.	.	.	.																																	.	.
Template Sequence		X	L	L	P	D	G	H	F	N	Q	H	S	D	T	S	I	I	L	A	D	G	N	A	I	I	T	T	.	.	.	.	T	A	A	A	D	T	F	S	L	D	E	X	I	P	H	X	A	D	A	V	A	G	D	I	L	L	Q	Q	G	N	F	S	.	.	L	D	K	T	R	A	L	F	Q	Y	A	R	S	R	G
Template Known Secondary structure					S	S	S			S	S																		.	.	.	.		T	T	T	T	T							G	G	G	G	T	T			T	T							S		S		.	.														T	T
Template Predicted Secondary structure																													.	.	.	.																																	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		V	P	V	L	I	D	P	K	G	T	D	F	E	R	.	.	.	Y	R	G	A	T	L	L	T	P	N	L	S	E	F	E	A	V	V	G	K	C	K	T	E	E	E	I	V	E	R	G	M	K	L	I	A	D	Y	E	L	S	A	L	L	V	T	R	S	E	Q	G	M	S	L	L	Q	P	G	K	A	P	L	H
Query Conservation																.	.	.
Alig confidence																.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		X	T	T	V	F	N	P	S	P	V	N	P	D	F	C	H	L	W	P	L	I	D	I	A	V	V	N	E	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	L	L	Q	P	Y	G	V	K	T	L	V	I	T	Q	G	A	A	G	A	W	L	V	Q	.	E	G	Q	R	Q	F
Template Known Secondary structure										S			G	G	G	G	G		G	G	G		S									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S		S							T	T	S						S	.	S	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																	.	.																							.	.
Query SS confidence																																	.	.																							.	.
Query Sequence		M	P	T	Q	A	Q	E	V	Y	D	V	T	G	A	G	D	T	V	I	G	V	L	A	A	T	L	A	A	G	N	S	.	.	L	E	E	A	C	F	F	A	N	A	A	A	G	V	V	V	G	K	L	G	T	S	.	.	T	V	S	P	I	E	L	E	N	A	V	R
Query Conservation																																	.	.																							.	.
Alig confidence																																	.	.																							.	.
Template Conservation
Template Sequence		C	P	A	V	P	A	E	A	L	D	T	T	G	A	G	D	T	F	L	A	V	X	L	A	S	A	L	L	R	G	V	A	P	D	A	L	A	L	A	H	A	S	R	A	A	A	I	T	V	S	R	R	G	T	L	S	A	F	P	G	S	R	E	L	A	A	L	L	T
Template Known Secondary structure										S			T	T																T	T	S		S																T	T	S		S	S	G	G	G	S										T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions