Job Description P76658 Confidence 100.00% Date Thu Jan 5 12:25:18 GMT 2012 Rank 43 Aligned Residues 265 % Identity 18% Template c3bf5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution Resolution 1.91 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		G	V	M	V	V	G	D	V	M	L	D	R	Y	W	Y	G	P	T	S	R	I	S	P	E	A	P	V	P	V	V	K	V	N	T	I	E	E	R	P	G	G	.	A	A	N	V	A	M	N	I	A	S	L	G	A	N	A	R	L	V	G	L	T	G	I	D	D	A	A	R	A	L	S	K	S	L	A	D	V	N
Query Conservation																																											.
Alig confidence																	.	.											.	.	.												.																															.
Template Conservation																	.	.											.	.	.																																											.
Template Sequence		F	L	A	Y	F	G	H	L	N	I	D	V	L	I	S	.	.	V	D	S	I	P	R	E	G	S	V	.	.	.	N	V	K	D	L	R	P	R	F	G	G	T	A	G	N	F	A	I	V	A	Q	K	F	R	I	P	F	D	L	Y	S	A	V	G	X	K	T	H	R	E	Y	L	.	A	X	I	E	S	X	G
Template Known Secondary structure																	.	.		S				S	S	S			.	.	.			S																				T	T											T	T	T						.						T	T
Template Predicted Secondary structure																	.	.											.	.	.																																											.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	C	D	F	V	S	V	P	T	H	P	T	I	T	K	L	R	V	L	S	R	N	Q	Q	L	I	R	L	D	F	E	E	G	F	E	G	V	D	P	Q	P	L	H	E	R	I	N	Q	A	L	S	S	I	G	A	L	V	L	S	D	Y	A	K	G	A	L	A	S	V	Q	Q	M	I	Q	L	A	R	K	A
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		I	N	T	G	H	V	E	K	F	E	D	E	S	G	P	I	C	Y	I	A	T	D	G	K	K	Q	V	S	F	X	H	Q	G	A	X	A	A	W	A	P	Q	L	A	.	.	.	.	.	.	.	.	D	E	Y	E	Y	V	H	F	S	T	G	P	N	.	.	.	.	.	.	.	.	Y	L	D	X	A	K	S	I
Template Known Secondary structure					T	T					T	T				S								S	S									T											.	.	.	.	.	.	.	.	S									S	S	S	S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.									120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140
		171	.	.	.	.	.	.	.	.	180	.	.	.									.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		G	V	P	V	L	I	D	P	K	G	T	D	F	.	.	.	.	.	.	.	.	E	R	Y	R	G	A	T	L	L	T	P	N	L	S	E	F	E	A	V	V	G	K	C	K	T	E	E	E	I	V	E	R	G	M	K	L	I	A	D	Y	E	L	S	A	L	L	V	T	R	S	E	Q	G	M	S	L	L	Q	P
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template Sequence		R	S	K	I	I	F	D	P	S	Q	E	I	H	K	Y	S	K	D	E	L	K	K	F	H	E	I	S	Y	X	S	I	F	N	D	H	E	Y	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	X	T	G	L	S	S	P	K	V	T	T	I	V	T	N	G	E	R	G	S	S	L	F	X	.
Template Known Secondary structure			S							G	G	G	G	G	G	S													S													.	.	.	.	.	.	.	.	.	.	.	.	.							S	S		S	S							G	G	G							.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.																											.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180														.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		G	K	A	P	L	H	M	P	T	Q	A	Q	E	V	Y	D	V	T	G	A	G	D	T	V	I	G	V	L	A	A	T	L	A	A	G	N	S	L	E	E	A	C	F	F	A	N	A	A	A	G	V	V	V	G	K	.	L	G	T	S	T	V	S	P	I	E	L	E	N	A	V	R
Query Conservation																																																									.
Alig confidence																.																																									.
Template Conservation																.
Template Sequence		D	G	K	K	Y	D	F	P	A	I	P	S	S	G	.	D	T	V	G	A	G	D	S	F	R	A	G	L	Y	L	A	L	Y	N	R	R	S	I	E	K	G	X	I	Y	G	T	I	I	A	H	H	V	I	D	D	G	I	E	N	F	S	L	N	X	E	D	L	E	R	E	T	E
Template Known Secondary structure		T	T												S	.			T	T															T	T																						S	T	T
Template Predicted Secondary structure																.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions