 |
Job Description | P76658 | Confidence | 42.59% | Date | Thu Jan 5 12:25:18 GMT 2012 |
Rank | 171 | Aligned Residues | 45 |
% Identity | 24% | Template | c1j6uA_ |
PDB info |
PDB header:ligase | Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; |
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
|
Resolution | 2.30 Å |
|
 |
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | |
|
. | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | V | M | V | V | G | D | V | M | L | D | R | Y | W | Y | G | P | T | S | R | I | S | P | E | A | P | V | P | V | V | K | V | N | T | I | E | E | R | P | G | G | A | A | . |
. |
N | V | A | M | N | I | A | S | L | G | A | N | A | R | L | V | G | L | T | G | I | D | D | A | A | R | A | L | S | K | S | L | A | D | V |
Query Conservation |   |
  |
|
|
|
|
|   |   |   |
|
|   |   |   |   |
|   |   |   |
|
|   |
|
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|
|
|
| . | . |
|
|
|   |   |
|
|   |
|
|   |   |
|   |
|
|
|   |
|
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |
|
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|   | . | . | . | . | . |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
K | I | H | F | V | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | G | G | I | G | X | S | A | V | A | L | H | E | F | S | N | G | N | D | V | Y | . |
. |
. |
. |
. |
G | S | N | I | E | E | T | E | R | T | A | Y | L | R | K | L |
Template Known Secondary structure |   |
 |  |  |  |  | T | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  | . | . | . | . | . |  |  |
| S | S |
|
|  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . |
  |
  |   |
90 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
N | V | K | C |
Query Conservation |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|   |   |
|
Template Sequence |   |
G | I | P | I |
Template Known Secondary structure |   |
T |
|
|  |
Template Predicted Secondary structure |   |
|
|  |  |
Template SS confidence |   |
|
|
|
|
  |   |
45 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|