Job Description P76235 Confidence 97.98% Date Thu Jan 5 12:21:00 GMT 2012 Rank 33 Aligned Residues 166 % Identity 15% Template c3v4pB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-7; PDBTitle: crystal structure of a4b7 headpiece complexed with fab act-1 Resolution 3.15 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.																														.	300	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	V
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		L	Y	Y	L	M	D	L	S	Y	S	M	.	K	D	D	L	E	R	V	R	Q	L	G	H	A	L	L	V	R	L	Q	E	V	T	H	S	V	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	S	T	V	P	S	K	L	R	H	P	C	P	T	R	L	E	R	C	Q	S	P	F	S	F	H	H	V
Template Known Secondary structure									S	G	G	G	.								T	T										T	T	T		S													S	S	T	T	T	S											S	S		T	T	S							S
Template Predicted Secondary structure													.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		302										.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.																												.	.	.																				.
Query SS confidence			.	.	.	.	.	.	.	.	.																												.	.	.																				.
Query Sequence		D	.	.	.	.	.	.	.	.	.	E	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	.	.	.	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	D	.	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V
Query Conservation			.	.	.	.	.	.	.	.	.																												.	.	.																				.
Alig confidence			.	.	.	.	.	.	.	.	.																												.	.	.																				.																		.	.
Template Conservation																																																																															.	.
Template Sequence		L	S	L	T	G	D	A	Q	A	F	E	R	E	V	G	R	Q	S	V	S	G	N	L	D	S	P	E	G	G	F	D	A	I	L	Q	A	A	L	C	Q	E	Q	I	G	W	R	N	V	S	R	L	L	V	F	T	S	D	D	T	F	H	T	A	G	D	G	K	L	G	G	I	F	M	P	S	D	G	.	.	H
Template Known Secondary structure						S		S								T	T							S	S	S	S	B																	T			S	S									S	S		B			T	T	G	G	G	G	G	T			B				S	.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.
		369	370	.				.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence		V	R	Y	.	.	.	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L	Q	S	T	F	D	N	F	A	M	Q	H	I	R	D	Q	D	D	I	Y	P	V	F	R	E	L	F	H
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence		C	H	L	D	S	N	G	L	Y	S	R	S	T	E	F	D	Y	P	S	V	G	Q	V	A	Q	A	L	S	A	A	N	I	Q	P	I	F	A	V	T	S	A	A	L	P	V	Y	Q	E	L	S	K	L	I	P
Template Known Secondary structure				B		T	T	S	B	B	G	G	G	G	G	B																T									S	T	T									T	T	S	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions