Job Description P76235 Confidence 78.20% Date Thu Jan 5 12:21:00 GMT 2012 Rank 44 Aligned Residues 181 % Identity 13% Template c3eh2B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Resolution 2.35 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																											.															.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.															.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	P	D	P	S	S	Q	A	V	M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	.	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	.	.	.	.	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.															.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.															.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	N	K	F	P	S	P	P	A	F	I	F	M	I	D	V	S	Y	N	A	I	R	T	G	L	V	R	L	L	C	E	E	L	K	S	L	L	D	F	L	P	R	E	G	G	A	E	E	S	A	I	R	V	G	F	V	T	Y	N	K	V	L	H	F	Y	N	Q	M	M	V	V	S	D	V	A	D	M	F	V	P
Template Known Secondary structure		G	G															S					T	T	T													G	G	G					T	T		S	S											S	S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
																									304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.									.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.									.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	.	.	D	N	W	A	D	D	S	P	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.									.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.											.	.				.	.									.	.	.
Template Conservation																																																				.	.											.	.
Template Sequence		L	L	D	G	F	L	V	N	V	N	E	S	R	A	V	I	T	S	L	L	D	Q	I	P	E	M	F	A	D	T	R	E	T	E	T	V	F	V	P	V	I	Q	A	G	M	E	A	L	K	A	.	.	A	E	C	A	G	K	L	F	L	F	.	.	H	T	S	L	P	I	A	E	A	P	G	K	L	K	N	R
Template Known Secondary structure				S	S	S	S	B		T	T	T	S																T	T								S														.	.		T									.	.			S				S	S	S	T	T
Template Predicted Secondary structure																																																				.	.											.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
																					356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L	Q	S	T	F	D	N	F	A	M	Q	H	I	R	D	Q	D	D	I	Y	P	V	F	R	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																									.
Template Sequence		D	D	R	K	L	I	N	T	D	K	E	K	T	L	F	Q	P	Q	T	G	A	Y	Q	T	L	A	K	E	C	V	A	Q	G	C	C	V	D	L	F	.	L	F	P	N	Q	Y	V	D	V	A	T	L	S	V	V	P	Q	L	T	G	G	S	V	Y	K	Y	A	S	F	Q	V	E	N	D	Q	E	R	F	L	S
Template Known Secondary structure				T	T	S	T	T	S	T	T	S					S		S	S	T													T							.				S	S								T						T	T							T	T
Template Predicted Secondary structure																																									.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		417	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	H	K	Q	N	A	T	A	K	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	R	R	D	V	Q	K	V	V	G
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions