Job Description P76235 Confidence 89.09% Date Thu Jan 5 12:21:00 GMT 2012 Rank 41 Aligned Residues 172 % Identity 13% Template c3egxB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 Resolution 3.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																									.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	S	S	Q	A	V	M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	.	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.															.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		R	P	P	Q	P	P	V	Y	L	F	V	F	D	V	S	H	N	A	V	E	T	G	Y	L	N	S	V	C	Q	S	L	L	D	N	L	D	L	L	.	P	G	N	T	R	T	K	I	G	F	I	T	F	D	S	T	I	H	F	Y	G	L	Q	E	S	L	S	Q	P	Q	M	L	I	V	S	D	I	E	D	V	F
Template Known Secondary structure		S	S													S							T												T	S	T	T	S	.	S			S										S	S	S								T	T	S	S	S									T	T	S
Template Predicted Secondary structure																																								.
Template SS confidence
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.		.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
																											304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.									.					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.									.
Template Sequence		I	P	M	P	E	N	L	L	V	N	L	N	E	S	K	E	L	V	Q	D	L	L	K	T	L	P	Q	M	F	T	K	T	L	E	T	Q	S	A	L	G	P	A	L	Q	A	A	F	K	L	M	S	.	.	.	.	.	P	T	G	G	R	M	S	V	.	F	Q	T	Q	L	P	T	L	G	V	G	A	L	K	P
Template Known Secondary structure			S		S	S	S	S																		G	G	G	T	T	T	T																				T	.	.	.	.	.	T	T							.				S				S	S	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.									.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.						.	630	.	.	.	.	.	.		.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
										348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.								.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	D	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L	Q	S	T	F	D	N	F	A	M	Q	.	.	.	.	.	.	.	H	I	R	D	Q	D	D	I	Y	P
Query Conservation		.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																													.																											.	.	.	.	.	.	.
Template Conservation																																						.
Template Sequence		R	E	E	P	N	H	R	S	S	A	K	M	T	P	S	T	D	F	Y	K	K	L	A	L	D	C	S	G	Q	Q	V	A	V	D	L	F	.	L	L	S	G	Q	Y	S	D	L	A	S	L	G	C	I	S	R	Y	S	A	G	S	V	Y	Y	Y	P	S	Y	H	H	Q	H	N	P	V	Q	V	Q	K	L	Q	K
Template Known Secondary structure							S	S	S							S		S											T	T	T							.				S	S								T					T	T	T							T	T			T	T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.		.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
		413	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	R	E	L	F	H	K	Q	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	Q	R	Y	L	T	R	K	I	G
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		734	.	.	.	.	.	740	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions