Job Description P76235 Confidence 89.76% Date Thu Jan 5 12:21:00 GMT 2012 Rank 40 Aligned Residues 107 % Identity 14% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280					.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																.															.	.	.	.																								.	.	.	.	.	.	.	.
Query SS confidence																																.															.	.	.	.																								.	.	.	.	.	.	.	.
Query Sequence		K	N	Y	E	K	R	P	D	P	S	S	Q	A	V	M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	.	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	.	.	.	.	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.
Query Conservation																																.															.	.	.	.																								.	.	.	.	.	.	.	.
Alig confidence																																.															.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	Y	C	R	K	S	K	P	P	N	P	P	A	F	I	F	M	I	D	V	S	Y	S	N	I	K	N	G	L	V	K	L	I	C	E	E	L	K	T	M	L	E	K	I	P	K	E	E	Q	E	E	T	S	A	I	R	V	G	F	I	T	Y	N	K	V	L	H	F	F	N	V	K	S	N	L	A	Q	P	Q
Template Known Secondary structure		G	G	G	S	G	G	G	S														S						T	T													G	G	G					T	T	S	S	S											S	S	S								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
																																						304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.					.
Template Conservation																																																																						.	.	.					.
Template Sequence		M	M	V	V	T	D	V	G	E	V	F	V	P	L	L	D	G	F	L	V	N	Y	Q	E	S	Q	S	V	I	H	N	L	L	D	Q	I	P	D	M	F	A	D	S	N	E	N	E	T	V	F	A	P	V	I	Q	A	G	M	E	A	L	K	A	A	D	C	P	G	.	.	.	K	L	F	I	.	F	H	S	S
Template Known Secondary structure								T	T	S						S	S	S	S	S	B		T	T	T	T															T	T	T																							T	S			.	.	.					.				S
Template Predicted Secondary structure																																																																						.	.	.					.
Template SS confidence
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.				.	.	.	580		.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions