Job Description P76235 Confidence 99.41% Date Thu Jan 5 12:21:00 GMT 2012 Rank 5 Aligned Residues 155 % Identity 11% Template c2x5nA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn10; PDBTitle: crystal structure of the sprpn10 vwa domain Resolution 1.30 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.						.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.											.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	C	L	M	D	V	S	G	S	M	D	Q	S	.	.	.	.	.	T	K	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	.	.	.	.	.	.	.	.	.	.	E	H	E	F	F	Y	S	Q	E	T	G	G	T
Query Conservation																.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	M	I	L	I	D	N	S	E	W	M	I	N	G	D	Y	I	P	T	R	F	E	A	Q	K	D	T	V	H	M	I	F	N	Q	K	I	N	D	N	P	E	N	M	C	G	L	M	T	I	G	D	N	S	P	Q	V	L	S	T	L	T	R	D	Y	G	K	F	L	S	A	M	H	D	L	P	V	R	G	N	A
Template Known Secondary structure									S	G	G	G	G		T	T	S	S	S																						T	T										T	T	S									S										T	T					S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	D	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L	Q	S	T
Query Conservation
Alig confidence																																				.	.																									.	.	.	.
Template Conservation																																				.	.																									.	.	.	.
Template Sequence		K	F	G	D	G	I	Q	I	A	Q	L	A	L	K	H	R	E	N	K	I	Q	R	Q	R	I	V	A	F	V	G	S	P	I	V	.	.	E	D	E	K	N	L	I	R	L	A	K	R	M	K	K	N	N	V	A	I	D	I	I	H	.	.	.	.	I	G	E	L	S	A	L	Q	H	F	I	D	A	A	N	S
Template Known Secondary structure																T		S		T	T	S										S			S	.	.	S															T	T								.	.	.	.		S														S
Template Predicted Secondary structure																																				.	.																									.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	N	F	A	M	Q	H	I	R	D	Q	D	D	I	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	S	C	H	L	V	S	I	P	P	S	P	Q	L	L
Template Known Secondary structure		T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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