Job Description P76235 Confidence 98.86% Date Thu Jan 5 12:21:00 GMT 2012 Rank 20 Aligned Residues 163 % Identity 12% Template c2b2xB_ PDB info PDB header:immune system Chain: B: PDB Molecule:integrin alpha-1; PDBTitle: vla1 rdeltah i-domain complexed with a quadruple mutant of the aqc22 fab Resolution 2.20 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.										.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence														.	.																		.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation														.	.																		.	.	.
Template Sequence		I	V	I	V	L	D	G	S	N	S	I	Y	.	.	P	W	E	S	V	I	A	F	L	N	D	L	L	K	R	G	P	.	.	.	K	Q	T	Q	V	G	I	V	Q	Y	G	E	N	V	T	H	E	F	N	L	N	K	Y	S	E	E	V	L	V	A	A	N	K	I	V	Q	R	G	G	R	Q	T	M	T	A	L
Template Known Secondary structure									S	T	T			.	.													T	T			T	.	.	.	T	S									S	S	S							T	T	S										T	T							S	S
Template Predicted Secondary structure														.	.																		.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	D	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L	Q	S	T	F	D	N	F	A	M
Query Conservation
Alig confidence																																														.	.
Template Conservation																																														.	.
Template Sequence		G	I	D	T	A	R	K	E	A	F	T	E	A	R	G	A	R	K	V	M	V	I	V	T	D	G	E	S	H	D	N	Y	R	L	K	Q	V	I	Q	D	C	E	D	E	.	.	N	I	Q	R	F	S	I	A	I	L	G	H	Y	S	T	E	K	F	V	E	E	I	K	S	I	A	S	E	P	T	E	K	H	F
Template Known Secondary structure								T	T	T	S	S	G	G	G	T										S	S			T	T	G	G	G											T	.	.	T										T	T												T	T	S		S	S	T	T	S	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	H	I	R	D	Q	D	D	I	Y	P	V	F	R	E	L	F	H	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	N	V	S	D	E	L	A	L	V	T	I	V	K	A	L	G	E	R
Template Known Secondary structure					S	S	G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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