Job Description P76235 Confidence 98.18% Date Thu Jan 5 12:21:00 GMT 2012 Rank 32 Aligned Residues 214 % Identity 15% Template c1yvrA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:60-kda ss-a/ro ribonucleoprotein; PDBTitle: ro autoantigen Resolution 1.95 Å

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		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.																.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	A	N	I	S	V	V	R	S	L	Q	N	S	L	A	R	R	T	A	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	K	R	R	E	L	H	A	L	E	E	N	L	A	I	I	S	N	S	E	P	A	Q	L	L	E	E	E	R	L	R	K	E	I	A	E	L	R	A	K	I	E
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	T	I	H	L	K	S	K	E	I	W	K	S	L	L	Q	D	M	P	L	T	A	L	L	R	N	L	G	K	M	T	A	D	S	V	L	A	P	A	S	S	E	V	S	S	V	C	E	R	L	T	N	E	K	L	L	K	K	A	R	I	H	P	F	H	I	L	V	A	L	E	T	Y	K	K	G	H	L	R
Template Known Secondary structure		S		T	T	G	G	G											T																T	T	T	T		T	T												T								T	T
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		225	.	.	.				.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.				.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.																																							.	.	.
Query SS confidence						.	.	.																																							.	.	.
Query Sequence		R	V	P	F	.	.	.	I	D	T	F	D	L	R	Y	K	N	Y	E	K	R	P	D	P	S	S	Q	A	V	M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	.	.	.	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A
Query Conservation						.	.	.																																							.	.	.
Alig confidence						.	.	.																									.														.	.	.																								.	.
Template Conservation																																	.																																								.	.
Template Sequence		W	I	P	D	T	S	I	V	E	A	L	D	N	A	F	Y	K	S	F	K	L	V	E	P	T	G	K	R	F	L	L	.	A	I	D	V	S	A	S	M	N	Q	R	V	L	G	S	I	L	N	A	S	V	V	A	A	A	M	C	M	L	V	A	R	T	E	K	D	S	H	M	.	.	V	A	F	S	D	E	M
Template Known Secondary structure																			T	S													.					S	G	G	G	G	S	B	S	T	T	S	S		B																	S	S				.	.				S	S	S
Template Predicted Secondary structure																																	.																																								.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.	.
		299	300	.	.								.	.	.	.	.	.	.	310			.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.									.	.																																							.
Query SS confidence						.	.	.	.	.	.	.									.	.																																							.
Query Sequence		K	E	V	D	.	.	.	.	.	.	.	E	H	E	F	F	Y	S	Q	.	.	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y	A	A	Q	A	S	D	G	D	.	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V
Query Conservation						.	.	.	.	.	.	.									.	.																																							.
Alig confidence						.	.	.	.	.	.	.									.	.																	.	.	.	.	.	.											.						.
Template Conservation																																							.	.	.	.	.	.											.
Template Sequence		L	P	C	P	I	T	V	N	M	L	L	H	E	V	V	E	K	M	S	D	I	T	M	G	S	T	D	C	A	L	P	M	L	W	A	Q	K	.	.	.	.	.	.	T	N	T	A	A	D	I	F	I	V	.	F	T	D	C	E	T	N	V	E	D	V	H	P	A	T	A	L	K	Q	Y	R	E	K	M	G	I
Template Known Secondary structure					S			T	T	S										T	T				S				T	T									.	.	.	.	.	.	T	T				S					.								S	S	S															T
Template Predicted Secondary structure																																							.	.	.	.	.	.											.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.							.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	K	L	I	V	C	A	M	T	S	N	G	F	S
Template Known Secondary structure											S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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