Job Description P76235 Confidence 54.78% Date Thu Jan 5 12:21:00 GMT 2012 Rank 45 Aligned Residues 173 % Identity 17% Template c1m2oA_ PDB info PDB header:protein transport/signaling protein Chain: A: PDB Molecule:protein transport protein sec23; PDBTitle: crystal structure of the sec23-sar1 complex Resolution 2.50 Å

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		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	P	S	S	Q	A	V	M	F	C	L	M	D	V	S	G	S	M	D	Q	S	T	K	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.																							.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																							.	.	.
Template Sequence		K	P	V	T	V	P	P	I	F	F	F	V	V	D	L	.	.	T	S	E	T	E	N	L	D	S	L	K	E	S	I	I	T	S	L	S	L	L	P	.	.	.	P	N	A	L	I	G	L	I	T	Y	G	N	V	V	Q	L	H	D	L	S	S	E	T	I	D	R	C	N	V	F	R	G	D	R	E	Y	Q	L
Template Known Secondary structure						S											.	.		S																		T	S		.	.	.	T	T									S	S								S	S	S	S	S								T	T	S
Template Predicted Secondary structure																	.	.																							.	.	.
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
																																													304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	N	I	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	L	T	E	M	L	T	G	Q	K	P	T	V	T	P	F	S	L	N	R	F	F	L	P	L	E	Q	V	E	F	K	L	N	Q	L	L	E	N	L	S	P	D	Q	W	S	V	P	A	G	H	R	P	L	R	A	T	G	S	A	L	N	I	A	S	L	L	L	Q	G	C	Y	K	N	I	P	A	R	I	I
Template Known Secondary structure										S							S	S	S	G	G	G	G	S																T				S		S				T	T	B																						T	T	S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		341	.	.	.	.	.	.	.		.	350	.	.	.	.	.																												.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	Q	A	S	D	G	D	.	N	W	A	D	D	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S	Y	I	E	I	T	R	R	A	H	Q	T	L	W	R	E	Y	E	H	L
Query Conservation										.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.					.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation				.	.																																																												.
Template Sequence		L	F	.	.	A	S	G	P	G	T	V	A	P	G	L	I	V	N	S	E	L	K	D	P	L	R	S	H	H	D	I	D	S	D	H	A	Q	H	Y	K	K	A	C	K	F	Y	N	Q	I	A	Q	R	V	A	A	N	G	H	T	V	D	I	F	.	A	G	C	Y	D	Q	I	G	M	S	E	M	K	Q	L	T
Template Known Secondary structure				.	.		S	S				S	S	S	S			S		S	B	T	T	S											T			T	T																			T							.				S	S			S
Template Predicted Secondary structure				.	.																																																												.
Template SS confidence
		286	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	T	F	D	N	F	A	M	Q	H	I	R	D	Q	D	D	I	Y	P	V	F	R	E	L	F	H	K	Q	N	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	T	G	G	V	L	L	L	T	D	A	F	S	T	A	I	F	K	Q	S	Y	L	R	L	F	A	K	D	E	E
Template Known Secondary structure					T							S		T	T	S										T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions