Job Description P76235 Confidence 98.88% Date Thu Jan 5 12:21:00 GMT 2012 Rank 19 Aligned Residues 126 % Identity 13% Template c1jeyB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna Resolution 2.50 Å

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		248	.	250	.	.	.	.	.	.	.	.	.	260	.							.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	V	M	F	C	L	M	D	V	S	G	S	M	.	.	.	.	.	.	D	Q	S	T	K	D	M	A	K	R	F	Y	I	L	L	Y	L	F	L	S	R	T	Y	K	N	V	E	V	V	Y	I	R	H	H	T	Q	A	K	E	V	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	A	A	V	V	L	C	M	D	V	G	F	T	M	S	N	S	I	P	G	I	E	S	P	F	E	Q	A	K	K	V	I	T	M	F	V	Q	R	Q	V	F	A	E	N	K	D	E	I	A	L	V	L	F	G	T	D	G	T	D	N	P	L	S	G	G	D	Q	Y	Q	N	I	T	V	H	R	H	L	M	L	P
Template Known Secondary structure													G	G	G	G			B	T	T	B																					T	T											S		S	S		B	S	T	T		T	T	T		S	T	T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
							304	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure		.	.	.	.	.											.	.																									.												.
Query SS confidence		.	.	.	.	.											.	.																									.												.
Query Sequence		.	.	.	.	.	H	E	F	F	Y	S	Q	E	T	G	.	.	G	T	I	V	S	S	A	L	K	L	M	D	E	V	V	K	E	R	Y	N	P	A	Q	W	.	N	I	Y	A	A	Q	A	S	D	G	D	.	N	W	A	D	D	S	P	L	C	H	E	I	L	A	K	K	L	L	P	V	V	R	Y	Y	S
Query Conservation		.	.	.	.	.											.	.																									.												.
Alig confidence		.	.	.	.	.											.	.																									.												.
Template Conservation
Template Sequence		D	F	D	L	L	E	D	I	E	S	K	I	Q	P	G	S	Q	Q	A	D	F	L	D	A	L	I	V	S	M	D	V	I	Q	H	E	T	I	G	K	K	F	E	K	R	H	I	E	I	F	T	D	L	S	S	R	F	S	K	S	Q	L	D	I	I	I	H	S	L	K	K	C	D	I	S	L	Q	F	F	L
Template Known Secondary structure											T	T					S	S																			S	S	S	S			S												S					T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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