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Job DescriptionP76235
Confidence98.88%DateThu Jan 5 12:21:00 GMT 2012
Rank19Aligned Residues126
% Identity13%Templatec1jeyB_
PDB info PDB header:dna binding protein/dnaChain: B: PDB Molecule:ku80; PDBTitle: crystal structure of the ku heterodimer bound to dna
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   248.250.........260. ........270.........280.........290.........300...
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Query Sequence  QAVMFCLMDVSGSM. . . . . . DQSTKDMAKRFYILLYLFLSRTYKNVEVVYIRHHTQAKEVDE. . . . . . . . . . . . . . . . . .
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Template Sequence  KAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHRHLMLP
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   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   304.....310... ......320.........330....... ..340........ .350.........360.........370...
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Query Sequence  . . . . . HEFFYSQETG. . GTIVSSALKLMDEVVKERYNPAQW. NIYAAQASDGD. NWADDSPLCHEILAKKLLPVVRYYS
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Template Sequence  DFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFL
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   87..90.........100.........110.........120.........130.........140.........150.........160.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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