Job Description P77788 Confidence 99.42% Date Thu Jan 5 12:32:50 GMT 2012 Rank 79 Aligned Residues 104 % Identity 21% Template c2j8qB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. Resolution 2.3 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.			.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																													.	.
Query SS confidence																		.	.																																													.	.
Query Sequence		M	K	M	I	E	V	V	A	A	I	I	E	R	D	G	K	.	.	I	L	L	A	Q	R	P	A	Q	S	D	Q	A	G	L	W	E	F	A	G	G	K	V	E	P	D	E	S	Q	R	Q	A	L	V	R	E	L	R	E	E	L	G	I	E	.	.	A	T	V	G	E	Y	V	A	S	H	Q	R	E	V	S	G
Query Conservation																		.	.																																													.	.
Alig confidence																		.	.							.	.	.	.	.																																		.	.
Template Conservation																										.	.	.	.	.
Template Sequence		M	R	R	T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	.	.	.	.	.	G	T	T	F	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	R	Q	D	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N	F	E
Template Known Secondary structure		S												S	S	S										.	.	.	.	.	S	T	T					S						T	T																																		S	S	S
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.						100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		77	.	.														80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		R	I	I	.	.	.	.	.	.	.	.	.	.	.	.	.	H	L	H	A	W	H	V	P	D	F	H	G	T	.	L	Q	A	H	E	H	Q	A	L	V	W	C	S	P	E	E	A
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	P	K	N	Y	K	L	V	A	A	P	L	F	E	L
Template Known Secondary structure		S			B	S	S			T	T		S			S												S	S							T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions