Return to main results Retrieve Phyre Job Id

Job DescriptionP0AB89
Confidence100.00%DateThu Jan 5 11:14:54 GMT 2012
Rank13Aligned Residues376
% Identity24%Templated1dofa_
SCOP infoL-aspartase-like L-aspartase-like L-aspartase/fumarase
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40.........50.........60.........70.........80.......
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  AVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIER
Query Conservation     
 
 

   
     


          

 
   


    
  

  

  
             
   
     
Alig confidence 









..

























...


















................



Template Conservation    

 
 

 ..        
          

 
 
 ...
    



   
  
  
................    
Template Sequence  HVSPFDWRYG. . SEEIRRLFTNEAIINAYLEVERALVC. . . ALEELGVAERGCCEKVNKA. . . . . . . . . . . . . . . . SVSA
Template Known Secondary structure 


GGGTTSS..
TTSS...TTSS
TT
................


T
Template Predicted Secondary structure 









..


...




................
Template SS confidence 















































































   2.......10. ........20.........30....... ..40.........50...... ...60
 
   88.90.........100.........110.........120.........130.........140.........150.........160.......
Predicted Secondary structure 


















Query SS confidence 















































































Query Sequence  TTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLL
Query Conservation     
 
 
    
                

 
 




  

  
  
  
   
   
  
   
   
     


 
Alig confidence 

















........



























.
























Template Conservation     
 
 
    
     ........   

 
 

 

  

  
 

  
  .
   
  
   
   
     
 
 
Template Sequence  DEVHDILSLVLLLEQKSG. . . . . . . . CRYVHYGATSNDIIDTAWALLIRRALAA. VKEKARAVGDQLASMARKYKTLEMV
Template Known Secondary structure  TT


........
S
TTTT

.TTT
Template Predicted Secondary structure 







........








.


Template SS confidence 















































































   61........70........ .80.........90.........100...... ...110.........120.........130.
 
   168.170.........180.........190.........200.. .......210.........220.........230.........240.....
Predicted Secondary structure 










..






















Query SS confidence 


































. .










































Query Sequence  SRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVE. . ILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYT
Query Conservation 



 
 
 
 
 
         
 
   

    ..      

 

 
                     


      
Alig confidence 


































..



















.....

















Template Conservation 



 
 
 
 
 
         
 
   

      
     




 
  
    ..... 
    
  


      
Template Sequence  GRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAVGTMASWGELGL. . . . . EVRRRVAERLGLPHHVIT
Template Known Secondary structure  TT

B



TTSS
GGGGGG.....TT

B
SS
Template Predicted Secondary structure 

















.....







Template SS confidence 















































































   140.........150.........160.........170.........180.........190...... ...200.........210....
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  TQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLA
Query Conservation       

   
    

 

  
 


 

      
   
       











  
 
   
           
Alig confidence 





































...........






























Template Conservation     
 

   
    
   
  
 


 

 


  
 ...........




 
 

   
 
   
    
      
Template Sequence  TQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEI. . . . . . . . . . . GEVVEGGANPTASERIVSLARYVRALTHVAF
Template Known Secondary structure  SSS

TSTTT...........
SS




Template Predicted Secondary structure 








...........









Template SS confidence 















































































   215....220.........230.........240.........250.. .......260.........270.........280...
 
   326...330.........340.... .....350.........360.........370......... 380.........390..... ....400.
Predicted Secondary structure 









.


.



..



Query SS confidence 


















.


































.















. .





Query Sequence  SKLPVSRWQRDLTDSTVLR. NLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELD. HNWEVLAEPIQTVMRR. . YGIEKP
Query Conservation          
 
        . 
         

      
  
 

 


   
 .      

     
  .. 
   
Alig confidence 




.












.


































.















..





Template Conservation       .  


      
   
          
      
  
 
  


   
    
   

     
   

    
Template Sequence  ENVAL. WHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEA
Template Known Secondary structure  TT

.
TT

GGG


TT

Template Predicted Secondary structure 


.
















Template SS confidence 















































































   293.... ..300.........310.........320.........330.........340.........350.........360.........370.
 
   402.......410.........420.........430
Predicted Secondary structure 








Query SS confidence 




























Query Sequence  YEKLKELTRGKRVDAEGMKQFIDGLALPE
Query Conservation 
  
  
            
 
       
Alig confidence 




























Template Conservation 
  
      
      
 
 
  
    
Template Sequence  YKKAKEVKALTFEYQKWPVERLIEDALSL
Template Known Secondary structure  TT





GGGG

TS
Template Predicted Secondary structure 






Template SS confidence 




























   372.......380.........390.........400
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions