Return to main results Retrieve Phyre Job Id

Job DescriptionP0AB89
Confidence100.00%DateThu Jan 5 11:14:54 GMT 2012
Rank6Aligned Residues411
% Identity21%Templated1c3ca_
SCOP infoL-aspartase-like L-aspartase-like L-aspartase/fumarase
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60.........70.........80.........90....
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  RYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVK
Query Conservation 

   
     


          

 
   


    
  

  

  
             
   
        
 
 
Alig confidence 




..























...




















.......

















Template Conservation 

   ..     

    
   
 

 
 
 ...
    



   
  
     ....... 
           
  
 
Template Sequence  RYSLS. . PMKDLWTEEAKYRRWLEVELAVTR. . . AYEELGMIPKGVTERIRNNAK. . . . . . . IDVELFKKIEEKTNHDVV
Template Known Secondary structure  GG

T..TTS...TTSS
TT

.......



Template Predicted Secondary structure 



..

...






.......





Template SS confidence 















































































   4.... .10.........20.........30.. .......40.........50... ......60.........70.
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  AVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQP
Query Conservation 
    
                

 
 




  

  
  
  
   
   
  
   
   
     


 



 
 
Alig confidence 










......





























.































Template Conservation 
 
  
    
......     

 
 




  

  
 

  
  .
   
  
   
   
    

 
 



 
 
Template Sequence  AFVEGIGSMIG. . . . . . EDSRFFHYGLTSSDVLDTANSLALVEAGKI. LLESLKEFCDVLWEVANRYKHTPTIGRTHGVH
Template Known Secondary structure  G......GGGGGTTTT

.TTT
TT
Template Predicted Secondary structure 

......










.










Template SS confidence 















































































   72.......80.. .......90.........100.........110.. .......120.........130.........140....
 
   175....180.........190.........200..... ....210.........220.........230.........240.........250.
Predicted Secondary structure 





...























Query SS confidence 






























. . .













































Query Sequence  ATPSTIGKEMANVAYRMERQYRQLNQVEILG. . . KINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPH
Query Conservation 
 
 
 
         
 
   

       ...   

 

 
                     


           
Alig confidence 






























...













........























Template Conservation 
 
 
 
         
 
   

           



 

      ........      
  


           
Template Sequence  AEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPP. . . . . . . . EVEEKALSYLGLKPEPVSTQVVPR
Template Known Secondary structure  T




TTSS
SSS
........TT

SS
SSS

T
Template Predicted Secondary structure 












........












Template SS confidence 















































































   145....150.........160.........170.........180.........190.. .......200.........210......
 
   252.......260.........270.........280.........290.........300.........310.........320.........330.
Predicted Secondary structure 





















Query SS confidence 















































































Query Sequence  DYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVS
Query Conservation 
   
    

 

  
 


 

      
   
       











  
 
   
                 
Alig confidence 





































...






































Template Conservation 
   
    
   
  
 


 

 
 
  
  

   ... 







 

   
     
    
            
Template Sequence  DRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP. . . FRKSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALW
Template Known Secondary structure  TSTTT
S

...





TT



TTT

S
Template Predicted Secondary structure 









...














Template SS confidence 















































































   217..220.........230.........240.........250.... .....260.........270.........280.........290...
 
   332.......340..... ....350.........360.........370......... 380.........390..... ....400.......
Predicted Secondary structure 







.


.



..



Query SS confidence 













.

































.















. .











Query Sequence  RWQRDLTDSTVLRN. LGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELD. HNWEVLAEPIQTVMRR. . YGIEKPYEKLKE
Query Conservation    
 
         .
         

      
  
 

 


   
 .      

     
  .. 
   

  
  
Alig confidence  .












.

































.















..











Template Conservation  . 


          
          
      
  
 
  


   
        

     
   

  
 

  
  
Template Sequence  . HERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQR
Template Known Secondary structure  .TT

S

TTTTTGGGTT

Template Predicted Secondary structure  .

















Template SS confidence 















































































   299300.........310.........320.........330.........340.........350.........360.........370.......
 
   408.410.........420...... ...430.........440.........450......
Predicted Secondary structure 




...













Query SS confidence 


















. . .





























Query Sequence  LTRGKRVDAEGMKQFIDGL. . . ALPEEEKARLKAMTPANYIGRAITMVDELK
Query Conservation 
            
 
   ...         
  


  


 
   

 
 
Alig confidence 


















...





























Template Conservation      
      
 
           
   

   


   

 
  

    
Template Sequence  NALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVDHIFERFE
Template Known Secondary structure  TSSS
T
TT

TT
TTTTT
Template Predicted Secondary structure 













Template SS confidence 



















































   378.380.........390.........400.........410.........420.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions