Job Description P0AB89 Confidence 100.00% Date Thu Jan 5 11:14:54 GMT 2012 Rank 27 Aligned Residues 380 % Identity 15% Template c3e04C_ PDB info PDB header:lyase Chain: C: PDB Molecule:fumarate hydratase; PDBTitle: crystal structure of human fumarate hydratase Resolution 1.95 Å

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		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.									.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure													.																	.	.	.	.	.	.	.	.
Query SS confidence													.																	.	.	.	.	.	.	.	.
Query Sequence		M	E	L	S	S	L	T	A	V	S	P	.	V	D	G	R	Y	G	D	K	V	S	A	L	R	G	I	F	.	.	.	.	.	.	.	.	S	E	Y	G	L	L	K	F	R	V	Q	V	E	V	R	W	L	Q	K	L	A	A	H	A	A	I	K	E	V	P	A	F	A	A	D	A	I	G	Y	L	D	A	I	V
Query Conservation													.																	.	.	.	.	.	.	.	.
Alig confidence													.																	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																																								.	.	.
Template Sequence		I	E	Y	D	T	F	G	E	L	K	V	P	N	D	K	Y	Y	G	A	Q	T	V	R	S	T	M	N	F	K	I	G	G	V	T	E	R	M	P	T	P	V	I	K	A	F	G	I	L	K	R	A	A	A	E	.	.	.	V	N	Q	D	Y	G	L	D	P	K	I	A	N	A	I	M	K	A	A	D	E	V	A
Template Known Secondary structure						T	T							T	T		S												T			S		G	G	G	B																			.	.	.			G	G	G	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.				.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		72	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure				.																							.	.	.															.	.	.
Query SS confidence				.																							.	.	.															.	.	.
Query Sequence		A	S	.	F	S	E	E	D	A	A	R	I	K	T	I	E	R	T	T	N	H	D	V	K	A	.	.	.	V	E	Y	F	L	K	E	K	V	A	E	I	P	E	.	.	.	L	H	A	V	S	E	F	I	H	F	A	C	T	S	E	D	I	N	N	L	S	H	A	L	M	L	K	T	A	R	D	E	V	I	L
Query Conservation				.																							.	.	.															.	.	.
Alig confidence				.																							.	.	.															.	.	.
Template Conservation
Template Sequence		E	G	K	L	N	D	H	F	P	L	V	V	W	Q	T	G	S	G	T	Q	T	N	M	N	V	N	E	V	I	S	N	R	A	I	E	M	L	G	G	E	L	G	S	K	I	P	V	H	P	N	D	H	V	N	K	S	Q	S	S	N	D	T	F	P	T	A	M	H	I	A	A	A	I	E	V	H	E	V	L	L
Template Known Secondary structure		T	T	S		G	G	G				B	S	S	S		T	T																					T			T	T	S			S	S							T	T	T																						T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																																																												.	.	.								.
Query SS confidence																																																												.	.	.								.
Query Sequence		P	Y	W	R	Q	L	I	D	G	I	K	D	L	A	V	Q	Y	R	D	I	P	L	L	S	R	T	H	G	Q	P	A	T	P	S	T	I	G	K	E	M	A	N	V	A	Y	R	M	E	R	Q	Y	R	Q	L	N	Q	V	E	.	.	.	I	L	G	K	I	N	G	.	A	V	G	N	Y	N	A	H	I	A	A
Query Conservation																																																												.	.	.								.
Alig confidence																																																												.	.	.								.
Template Conservation
Template Sequence		P	G	L	Q	K	L	H	D	A	L	D	A	K	S	K	E	F	A	Q	I	I	K	I	G	R	T	H	T	Q	D	A	V	P	L	T	L	G	Q	E	F	S	G	Y	V	Q	Q	V	K	Y	A	M	T	R	I	K	A	A	M	P	R	I	Y	E	L	A	A	G	G	T	A	V	G	T	G	L	N	T	R	I	G
Template Known Secondary structure																		T	T	T								T	T																													T		T	T	T	T				T	T		T	T	T	S	S		T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280				.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																											.	.	.																																				.	.	.
Query SS confidence																											.	.	.																																				.	.	.
Query Sequence		Y	P	E	V	D	W	H	Q	F	S	E	E	F	V	T	S	L	G	I	Q	W	N	P	Y	T	.	.	.	T	Q	I	E	P	H	D	Y	I	A	E	L	F	D	C	V	A	R	F	N	T	I	L	I	D	F	D	R	D	V	W	G	Y	I	A	.	.	.	L	N	H	F	K	Q	K	T	I	A	G	E	I	G
Query Conservation																											.	.	.																																				.	.	.
Alig confidence				.	.	.	.																				.	.	.																																				.	.	.
Template Conservation				.	.	.	.
Template Sequence		F	A	.	.	.	.	E	K	V	A	A	K	V	A	A	L	T	G	L	P	F	V	T	A	P	N	K	F	E	A	L	A	A	H	D	A	L	V	E	L	S	G	A	M	N	T	T	A	C	S	L	M	K	I	A	N	D	I	R	F	L	G	S	G	P	R	S	G	L	G	E	L	I	L	P	E	N	E	P	G
Template Known Secondary structure				.	.	.	.												S	S						S																																					T			S	S	S	S										S
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		289	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		S	S	T	M	P	H	K	V	N	P	I	D	F	E	N	S	E	G	N	L	G	L	S	N	A	V	L	Q	H	L	A	S	K	L	P	V	S	R	W	Q	R	D	L	T	D	S	T	V	L	R	N	L	G	V	G	I	G	Y	A	L	I	A	Y	Q	S	T	L	K	.	G	V	S	K	L	E	V	N	R	D	H
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		S	S	I	M	P	G	K	V	N	P	T	Q	C	E	A	M	T	M	V	A	A	Q	V	M	G	N	H	V	A	V	T	V	G	G	S	N	G	H	F	E	L	N	V	F	K	P	M	M	I	K	N	V	L	H	S	A	R	L	L	G	D	A	S	V	S	F	T	E	N	C	V	V	G	I	Q	A	N	T	E	R
Template Known Secondary structure			S	S	S	T	T																														T		B	T	T	B																													T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	E	L	D	H	N	W	E	V	L	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	K	L	M	N	E	S	L	M	K	P	K	D
Template Known Secondary structure					T	T	T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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