Job Description P0AB89 Confidence 8.87% Date Thu Jan 5 11:14:54 GMT 2012 Rank 48 Aligned Residues 77 % Identity 22% Template c3dikA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid protein p24; PDBTitle: pseudo-atomic model of the hiv-1 ca hexameric lattice Resolution 9.00 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	Y	F	L	K	E	K	V	A	E	I	P	E	L	H	A	V	S	E	F	I	H	F	A	C	T	S	E	D	I	N	N	L	S	H	A	L	M	L	K	T	A	R	D	E	V	I	L	P	Y	W	R	Q	L	I	D	G	I	K	D	L	A	V	Q	Y	R	D	I	P	L	L	S	R	T	H	G	Q	P	A
Query Conservation
Alig confidence																								.	.																							.	.																			.	.	.	.	.	.
Template Conservation																								.	.																							.	.																			.	.	.	.	.	.
Template Sequence		T	L	N	A	W	V	K	V	V	E	E	K	A	F	S	P	E	V	I	P	M	F	.	.	S	A	L	S	E	G	A	T	P	Q	D	L	N	T	M	L	N	T	V	G	G	H	.	.	Q	A	A	M	Q	M	L	K	E	T	I	N	E	E	A	A	E	W	.	.	.	.	.	.	D	R	L	H	P	V	H	A
Template Known Secondary structure													S	S	S		T	T						.	.				T	T	T													S				.	.																			.	.	.	.	.	.				S
Template Predicted Secondary structure																								.	.																							.	.																			.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	S	T	I	G	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	I	A	P	G	Q
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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