Job Description P0AB89 Confidence 100.00% Date Thu Jan 5 11:14:54 GMT 2012 Rank 4 Aligned Residues 424 % Identity 18% Template c2vd6B_ PDB info PDB header:lyase Chain: B: PDB Molecule:adenylosuccinate lyase; PDBTitle: human adenylosuccinate lyase in complex with its substrate2 n6-(1,2-dicarboxyethyl)-amp, and its products amp and3 fumarate. Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	L	T	A	V	S	P	V	D	G	R	Y	G	D	K	V	S	A	L	R	G	I	F	S	E	Y	G	L	L	K	F	R	V	Q	V	E	V	R	W	L	Q	K	L	A	A	H	A	A	I	K	E	V	P	A	F	A	A	D	A	I	G	Y	L	D	A	I	V	A	S	F	S	E	E	D	A	A	R	I	K
Query Conservation
Alig confidence																.	.																																	.		.											.	.	.	.	.	.
Template Conservation																.	.																																	.		.											.	.	.	.	.	.
Template Sequence		S	P	D	S	Y	R	S	P	L	A	S	R	Y	A	.	.	S	P	E	M	C	F	V	F	S	D	R	Y	K	F	R	T	W	R	Q	L	W	L	W	L	A	E	A	E	Q	T	L	G	.	L	.	P	I	T	D	E	Q	I	Q	E	M	.	.	.	.	.	.	K	S	N	L	E	N	I	D	F	K	M	A	A
Template Known Secondary structure			T	T	S								T	T	S	.	.								T	S																						T	T	.		.	S										.	.	.	.	.	.			T	S	S
Template Predicted Secondary structure																.	.																																	.		.											.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.			.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.		.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	E	R	T	T	N	H	D	V	K	A	V	E	Y	F	L	K	E	K	V	A	E	I	P	E	L	H	A	V	S	E	F	I	H	F	A	C	T	S	E	D	I	N	N	L	S	H	A	L	M	L	K	T	A	R	D	E	V	I	L	P	Y	W	R	Q	L	I	D	G	I	K	D	L	A	V	Q	Y	R	D
Query Conservation
Alig confidence																								.	.	.	.	.	.																													.
Template Conservation																								.	.	.	.	.	.																													.
Template Sequence		E	E	E	K	R	L	R	H	D	V	M	A	H	V	H	T	F	G	H	C	C	P	.	.	.	.	.	.	K	A	A	G	I	I	H	L	G	A	T	S	C	Y	V	G	D	N	T	D	L	I	I	L	R	N	A	L	.	D	L	L	L	P	K	L	A	R	V	I	S	R	L	A	D	F	A	K	E	R	A	S
Template Known Secondary structure								S															T	.	.	.	.	.	.	T	T	G	G	G	T	T	T	T			T																	.																					T	T	T
Template Predicted Secondary structure																								.	.	.	.	.	.																													.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.																								.	.
Query SS confidence																																									.	.	.																								.	.
Query Sequence		I	P	L	L	S	R	T	H	G	Q	P	A	T	P	S	T	I	G	K	E	M	A	N	V	A	Y	R	M	E	R	Q	Y	R	Q	L	N	Q	V	E	.	.	.	I	L	G	K	I	N	G	A	V	G	N	Y	N	A	H	I	A	A	Y	P	E	V	D	.	.	W	H	Q	F	S	E	E	F	V	T	S	L	G
Query Conservation																																									.	.	.																								.	.
Alig confidence																																									.	.	.																								.	.
Template Conservation
Template Sequence		L	P	T	L	G	F	T	H	F	Q	P	A	Q	L	T	T	V	G	K	R	C	C	L	W	I	Q	D	L	C	M	D	L	Q	N	L	K	R	V	R	D	D	L	R	F	R	G	V	K	G	T	T	G	T	Q	A	S	F	L	Q	L	F	E	G	D	D	H	K	V	E	Q	L	D	K	M	V	T	E	K	A	G
Template Known Secondary structure									T	T																																			B			S			T	T	S	S								T	T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		239	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		I	Q	.	W	N	P	Y	T	T	Q	I	E	P	H	D	Y	I	A	E	L	F	D	C	V	A	R	F	N	T	I	L	I	D	F	D	R	D	V	W	G	Y	I	A	L	N	H	F	K	Q	K	T	I	A	G	E	I	G	S	S	T	M	P	H	K	V	N	P	I	D	F	E	N	S	E	G	N	L	G	L	S
Query Conservation				.
Alig confidence				.																																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	R	A	F	I	I	T	G	Q	T	Y	T	R	K	V	D	I	E	V	L	S	V	L	A	S	L	G	A	S	V	H	K	I	C	T	D	I	R	L	L	A	N	L	K	E	M	E	E	.	.	.	.	.	.	.	.	.	.	.	P	F	Y	K	R	N	P	M	R	S	E	R	C	C	S	L	A	R	H	L
Template Known Secondary structure			S		B		S			S	S	S			T																														T	T	S				.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280												.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.		.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure																														.																																			.
Query SS confidence																														.																																			.
Query Sequence		N	A	V	L	Q	H	L	A	S	K	L	P	V	S	R	W	Q	R	D	L	T	D	S	T	V	L	R	N	.	L	G	V	G	I	G	Y	A	L	I	A	Y	Q	S	T	L	K	G	V	S	K	L	E	V	N	R	D	H	L	L	D	E	L	D	.	H	N	W	E	V	L	A	E	P	I	Q	T	V	M	R	R
Query Conservation																														.																																			.
Alig confidence																														.																																			.
Template Conservation
Template Sequence		M	T	L	V	M	D	P	L	Q	T	A	S	V	Q	W	F	E	R	T	L	D	D	S	A	N	R	R	I	C	L	A	E	A	F	L	T	A	D	T	I	L	N	T	L	Q	N	I	S	E	G	L	V	V	Y	P	K	V	I	E	R	R	I	R	Q	E	L	P	F	M	A	T	E	N	I	I	M	A	M	V	K
Template Known Secondary structure					T									T			T	T			G	G	G																											S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		396	.	.	.			400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.								.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure						.	.																				.	.	.	.	.	.	.
Query SS confidence						.	.																				.	.	.	.	.	.	.
Query Sequence		Y	G	I	E	.	.	K	P	Y	E	K	L	K	E	L	T	R	G	K	R	V	D	A	E	G	.	.	.	.	.	.	.	M	K	Q	F	I	D	G	L	A	L	P	E	E	E	K	A	R	L	K	A	M	T	P	A	N	Y	I	G	R	A	I	T	M	V	D	E	L
Query Conservation						.	.																				.	.	.	.	.	.	.
Alig confidence						.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	G	S	R	Q	D	C	H	E	K	I	R	V	L	S	Q	Q	A	A	S	V	V	K	Q	E	G	G	D	N	D	L	I	E	R	I	Q	V	D	A	Y	F	S	P	I	H	S	Q	L	D	H	L	L	D	P	S	S	F	T	G	R	A	S	Q	Q	V	Q	R	F
Template Known Secondary structure		T	T																								S														G	G	G	G	G	G	G	G	G					T		G	G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460