Job Description P0AB89 Confidence 100.00% Date Thu Jan 5 11:14:54 GMT 2012 Rank 7 Aligned Residues 395 % Identity 17% Template c1yisA_ PDB info PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: structural genomics of caenorhabditis elegans: adenylosuccinate lyase Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	S	S	L	T	A	V	S	P	V	D	G	R	Y	G	D	K	V	S	A	L	R	G	I	F	S	E	Y	G	L	L	K	F	R	V	Q	V	E	V	R	W	L	Q	K	L	A	A	H	A	A	I	K	E	V	P	A	F	A	A	D	A	I	G	Y	L	D	A	I	V	A	S	F	S	E	E	D	A	A	R
Query Conservation
Alig confidence								.	.											.																										.	.	.																			.	.	.	.
Template Conservation								.	.											.																										.	.	.																			.	.	.	.
Template Sequence		S	E	D	K	F	E	.	.	S	V	L	S	T	R	Y	C	K	N	.	S	P	L	V	S	I	L	S	E	T	N	K	A	T	L	W	R	Q	L	W	I	W	L	A	E	.	.	.	A	E	K	E	L	G	L	K	Q	V	T	Q	D	A	I	D	E	X	.	.	.	.	K	S	N	R	D	V	F	D	W	P	F
Template Known Secondary structure		G	G	G	S			.	.						T	T	T	T	T	.		T					T	S																		.	.	.					T	T		T	T	S									.	.	.	.			T	T	T
Template Predicted Secondary structure								.	.											.																										.	.	.																			.	.	.	.
Template SS confidence
		3	.	.	.	.	.			.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.					.	.	.	.	.	.	.	.	70	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	T	I	E	R	T	T	N	H	D	V	K	A	V	E	Y	F	L	K	E	K	V	A	E	I	P	E	L	H	A	V	S	E	F	I	H	F	A	C	T	S	E	D	I	N	N	L	S	H	A	L	M	L	K	T	A	R	D	E	V	I	L	P	Y	W	R	Q	L	I	D	G	I	K	D	L	A	V	Q	Y
Query Conservation
Alig confidence																										.	.	.	.	.	.																													.
Template Conservation																										.	.	.	.	.	.																													.
Template Sequence		I	R	S	E	E	R	K	L	K	H	D	V	X	A	H	N	H	A	F	G	K	L	C	P	.	.	.	.	.	.	T	A	A	G	I	I	H	L	G	A	T	S	C	F	V	Q	D	N	A	D	L	I	A	Y	R	D	S	I	.	D	H	I	L	K	R	F	A	T	V	I	D	R	L	A	A	F	S	L	K	N
Template Known Secondary structure									S	S															T	.	.	.	.	.	.	T	T	G	G	G	T	T	T	T																				.																					T
Template Predicted Secondary structure																										.	.	.	.	.	.																													.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.																					.	.
Query SS confidence																																														.	.	.																					.	.
Query Sequence		R	D	I	P	L	L	S	R	T	H	G	Q	P	A	T	P	S	T	I	G	K	E	M	A	N	V	A	Y	R	M	E	R	Q	Y	R	Q	L	N	Q	V	E	I	L	G	.	.	.	K	I	N	G	A	V	G	N	Y	N	A	H	I	A	A	Y	P	E	V	D	.	.	W	H	Q	F	S	E	E	F	V	T	S
Query Conservation																																														.	.	.																					.	.
Alig confidence																																														.	.	.																					.	.
Template Conservation
Template Sequence		K	E	V	V	T	V	G	R	T	H	Y	Q	T	A	S	L	V	T	V	G	K	R	G	V	L	W	A	Q	E	L	L	X	A	F	Q	S	L	S	E	F	R	D	K	X	R	F	R	G	I	K	G	A	T	G	T	Q	D	S	F	L	T	L	F	A	G	D	E	S	K	V	E	A	L	D	E	L	V	T	K	K
Template Known Secondary structure		T	T								T	T																																			B			S		T	T	T	S	S								T	T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		237	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	G	I	Q	W	N	.	P	Y	T	T	Q	I	E	P	H	D	Y	I	A	E	L	F	D	C	V	A	R	F	N	T	I	L	I	D	F	D	R	D	V	W	G	Y	I	A	L	N	H	F	K	Q	K	T	I	A	G	E	I	G	S	S	T	M	P	H	K	V	N	P	I	D	F	E	N	S	E	G	N	L	G
Query Conservation								.
Alig confidence								.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	F	S	N	R	F	L	I	T	G	Q	T	Y	S	R	Q	Q	D	S	Q	L	V	F	S	L	S	L	L	G	A	A	A	K	K	V	C	T	D	I	R	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	F	G	E	L	L	E	P	K	K	N	P	X	K	S	E	R	C	C	A	L	S	R
Template Known Secondary structure		T	T		S		B		S	S		S	S	S			T																												.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.														.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																															.																																				.
Query SS confidence																															.																																				.
Query Sequence		L	S	N	A	V	L	Q	H	L	A	S	K	L	P	V	S	R	W	Q	R	D	L	T	D	S	T	V	L	R	.	N	L	G	V	G	I	G	Y	A	L	I	A	Y	Q	S	T	L	K	G	V	S	K	L	E	V	N	R	D	H	L	L	D	E	L	D	.	H	N	W	E	V	L	A	E	P	I	Q	T	V	M
Query Conservation																															.																																				.
Alig confidence																															.																																				.
Template Conservation
Template Sequence		K	L	I	N	A	P	Q	E	A	L	T	I	L	A	D	Q	G	L	E	R	T	L	D	D	S	A	G	R	R	X	L	I	P	D	V	L	L	T	A	E	A	L	L	T	T	L	Q	N	I	F	E	G	L	S	V	Q	T	D	N	V	K	K	I	V	E	D	E	I	A	F	L	G	L	E	K	A	X	X	X	L
Template Known Secondary structure					T	S										T			T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		394	.	.	.	.	.				400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		R	R	Y	G	I	E	.	.	.	K	P	Y	E	K	L	K	E	L	T	R	G	K	R	V	D	A	E	G	M	K	Q	F	I	D	G	L	A	L	P	E	E	E	K	A	R	L	K	A	M	T	P	A	N	Y	I	G	R	A	I	T	M	V	D	E	L
Query Conservation								.	.	.
Alig confidence								.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	X	A	D	P	F	F	D	S	V	R	D	R	V	V	G	L	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	I	N	F	T	G	R	C	V	S	Q	T	E	S	F
Template Known Secondary structure					T	T	T	T	S	T	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	S	T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.																														.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.