Return to main results Retrieve Phyre Job Id

Job DescriptionP77596
Confidence64.88%DateThu Jan 5 12:30:53 GMT 2012
Rank8Aligned Residues120
% Identity18%Templatec3c8oB_
PDB info PDB header:hydrolase regulatorChain: B: PDB Molecule:regulator of ribonuclease activity a; PDBTitle: the crystal structure of rraa from pao1
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   437..440.........450.........460.........470.........480.........490.........500....... ..510.....
Predicted Secondary structure 



































.



Query SS confidence 






































































.







Query Sequence  VCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGT. GMEETYQL
Query Conservation 
 

 




 




 


              
 







 
  

  
 
  













.





  
Alig confidence 


















.............



















..
















.







Template Conservation     
 
            
............. 
 

    
      


 ..   
 




  
    
  
     
Template Sequence  VQVVEPMFSNFGGRDSFGG. . . . . . . . . . . . . EIVTIKCFEDNSLVKEQVDK. . DGKGKVLVVDGGGSLRRALLGDMLAE
Template Known Secondary structure 


S


SS
S
.............
SS

TTS..

BT
TT
SSSBS

Template Predicted Secondary structure 














.............



..










Template SS confidence 















































































   16...20.........30.... .....40.........50.... .....60.........70.........80
 
   516...520.. .......530... ......540.........550.........560.........570...
Predicted Secondary structure 

......





........



















Query SS confidence 






. . . . . .










. . . . . . . .







































Query Sequence  TSALKHI. . . . . . SWGKTVSLITD. . . . . . . . ARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDR
Query Conservation 
 

 
 ......


  





........






 
  








 










 
 


  
Alig confidence 






......










........






















..














Template Conservation   
   
  
 



 


  

  
  



 
  
           
 

 


..
 
 


 
 

 

Template Sequence  KAAKNGWEGIVVYGCIRDVDVIAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGG. . VTFRPGEFVYADNNG
Template Known Secondary structure  TTB


TTSSS







S

S

TT..
TTS
SS
Template Predicted Secondary structure 



























..






Template SS confidence 







































































   81........90.........100.........110.........120.........130..... ....140.........150
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions