 |
Job Description | P77596 | Confidence | 26.93% | Date | Thu Jan 5 12:30:53 GMT 2012 |
Rank | 33 | Aligned Residues | 33 |
% Identity | 30% | Template | c1rkjA_ |
PDB info |
PDB header:transcription/rna | Chain: A: PDB Molecule:nucleolin; |
PDBTitle: solution structure of the complex formed by the two n-2 terminal rna-binding domains of nucleolin and a pre-rrna3 target
|
Resolution | UNK |
|
  |   |
474 | . | . | . | . | . | 480 | . | . | . | . | . | . | . | |
|
. | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | V | F | V | S | E | A | Q | A | I | K | A | I | K | . |
. |
R | E | E | I | V | Q | G | D | I | M | V | V | I | G | G | G | P | S | G |
Query Conservation |   |
|
|
|
|
|
|
|   |
|   |   |
|
|   | . | . |   |
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|
|
|   |   |
|   |
|   |   |
|   |
|   |   |
|   |   |
|
|
Template Sequence |   |
I | E | F | K | S | E | A | D | A | E | K | N | L | E | E | K | Q | G | A | E | I | D | G | R | S | V | S | L | Y | Y | T | G | E | K | G |
Template Known Secondary structure |   |
 |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | T | S |
|
| S | S | S | S |
|
|
|
|  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
141 | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|