Job Description P06612 Confidence 73.84% Date Thu Jan 5 10:59:12 GMT 2012 Rank 95 Aligned Residues 104 % Identity 22% Template c2au3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna primase; PDBTitle: crystal structure of the aquifex aeolicus primase (zinc binding and2 rna polymerase domains) Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	A	L	V	I	V	E	S	P	A	K	A	K	T	I	N	K	Y	L	G	S	D	Y	V	V	K	S	S	V	G	H	I	R	D	L	P	T	S	G	S	A	A	K	K	S	A	D	S	T	S	T	K	T	A	K	K	P	K	K	D	E	R	G	A	L	V	N	R	M	G	V	D	P	W	H	N	W	E	A
Query Conservation
Alig confidence																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	F	A	I	L	V	E	G	Y	F	D	L	L	R	L	F	S	E	.	G	I	R	N	V	V	A	P	L	G	T	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T						S	S										T	.	T			S					S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.											.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	E	V	L	P	G	K	E	K	V	V	S	E	L	K	Q	L	A	E	K	A	D	H	I	Y	L	A	T	D	L	D	R	E	G	E	A	I	A	W	H	L	R	E	V	I	G	G	D	D	A	R	Y	S	R	V	V	F	N	E	.	.	.	.	.	.	.	.	.	.	I	T	K	N	A	I	R	Q	A	F
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	T	Q	N	Q	A	N	L	L	S	K	F	T	K	K	V	Y	I	L	Y	D	G	D	D	A	G	R	K	A	M	K	S	A	I	P	L	L	L	S	A	G	V	E	V	Y	P	V	Y	L	P	E	G	Y	D	P	D	E	F	I	K	E	F	G	K	E	E	L	R	R	L	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.										T	T		S								S	S																	T	T										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	P	G	E	L	N	I	D	R	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	S	G	E	L	F	E	T	L	I	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		344	.	.	.	.	.	350	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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