Job Description P06612 Confidence 96.53% Date Thu Jan 5 10:59:12 GMT 2012 Rank 14 Aligned Residues 104 % Identity 13% Template c1i3qI_ PDB info PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution Resolution 3.10 Å

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		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.			.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		C	P	T	C	G	R	K	M	G	I	R	T	A	S	T	G	V	.	.	F	L	G	C	S	G	Y	A	L	P	P	K	E	R	C	K	T	T	I	N	L	V	P	E	N	E	V	L	N	V	L	E	G	E	D	A	E	T	N	A	L	R	A	K	R	R	C	P	K	C	G	T	A	M	D	S	Y	L	I	D	P
Query Conservation																			.	.
Alig confidence																			.	.							.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	R	D	C	N	N	M	L	Y	P	R	E	D	K	E	N	N	R	L	L	F	E	C	R	T	.	.	.	.	.	.	.	.	C	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	E	A	G	S
Template Known Secondary structure			S	S	S			B							T	T	T	T							S	S	.	.	.	.	.	.	.	.	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.									.	.	.																																							.	.	.	.	.	40
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.							.	.	720	.	.	.	.	.	.	.			.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.											.	.
Query SS confidence																																											.	.	.	.	.	.											.	.
Query Sequence		K	R	K	L	H	V	C	G	N	N	P	T	C	D	G	Y	E	I	E	E	G	E	F	R	I	K	G	Y	D	G	P	I	V	E	C	E	K	C	G	S	E	.	.	.	.	.	.	M	H	L	K	M	G	R	F	G	K	.	.	Y	M	A	C	T	N	E	E	C	K	N	T	R	K	I	L	R	N	G	E	V
Query Conservation																																											.	.	.	.	.	.											.	.
Alig confidence																																											.	.	.	.	.	.											.	.							.	.
Template Conservation																																																																			.	.
Template Sequence		P	L	V	Y	R	H	E	L	I	T	N	I	G	E	T	A	G	V	V	Q	D	I	G	S	D	P	T	L	P	R	S	D	R	E	C	P	K	C	H	S	R	E	N	V	F	F	Q	S	Q	Q	R	R	K	D	T	S	M	V	L	F	F	V	C	L	S	.	.	C	S	H	I	F	T	S	D	Q	K	N	K	R
Template Known Secondary structure		S							S	S			T	T	S	S		S			T	T	G	G	G		T	T	S								T	T	T			S		B						S				S	S									B	T	T	.	.	T								T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.	.	.	.	.	.
		749	750
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		119	120

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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