Job Description P06612 Confidence 100.00% Date Thu Jan 5 10:59:12 GMT 2012 Rank 5 Aligned Residues 495 % Identity 28% Template c1gl9B_ PDB info PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp Resolution 3.2 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.																				.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	G	K	A	L	V	I	V	E	S	P	A	K	A	K	T	I	N	K	Y	L	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	V	V	K	S	S	V	G	H	I	R	D	L	P	T	S	G	S	A	A	K	K	S	A	D	S	T	S	T	K	T	A	K	K	P	K	K
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	P	A	L	F	I	V	E	S	P	T	K	A	R	Q	I	S	R	F	F	G	K	P	S	V	K	V	L	D	G	A	V	V	Y	E	I	P	M	Q	K	Y	V	L	M	V	T	A	S	I	G	H	V	V	D	L	I	T	N	R	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	S										T	T	S			B					T	T									S	S										S		S					S	S	S	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		D	E	R	G	A	L	V	N	R	M	G	V	D	P	W	H	N	W	E	A	H	Y	E	V	L	.	.	P	G	K	E	K	V	V	S	E	L	K	Q	L	A	E	K	A	D	H	I	Y	L	A	T	D	L	D	R	E	G	E	A	I	A	W	H	L	R	E	V	I	G	G	D	D	A	R	Y	S	R	V	V	F
Query Conservation																											.	.
Alig confidence		.	.	.	.	.	.	.	.	.																	.	.																																											.
Template Conservation		.	.	.	.	.	.	.	.	.																																																													.
Template Sequence		.	.	.	.	.	.	.	.	.	H	G	V	L	V	N	G	R	F	V	P	V	Y	A	S	I	K	V	D	N	S	R	S	R	I	E	A	L	R	K	L	A	H	D	A	E	F	V	I	V	G	T	D	P	D	T	E	G	E	K	I	A	W	D	L	K	N	L	L	S	.	G	C	G	A	V	K	R	A	E	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T			T	T	T	T													T															S								S	S														T	T	.	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																													.
Template SS confidence
											566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.		.	.	.	.	630	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		N	E	I	T	K	N	A	I	R	Q	A	F	N	K	P	G	E	L	N	I	D	R	V	N	A	Q	Q	A	R	R	F	M	D	R	V	V	G	Y	M	V	S	P	L	L	W	K	K	I	A	R	G	.	L	S	A	G	R	V	Q	S	V	A	V	R	L	V	V	E	R	E	R	E	I	K	A	F	V	P	E	E
Query Conservation																																																					.
Alig confidence																																																					.
Template Conservation
Template Sequence		H	E	V	T	R	R	A	I	L	E	A	L	E	S	L	R	D	V	D	E	N	L	V	K	A	Q	V	V	R	R	I	E	D	R	W	I	G	F	V	L	S	Q	K	L	W	E	R	F	N	N	R	N	L	S	A	G	R	A	Q	T	L	V	L	G	W	I	I	D	R	F	Q	E	S	R	E	R	R	K	I	A
Template Known Secondary structure		S	S		S								T	T	S		B																															T	T			S	S					S											T	T					S
Template Predicted Secondary structure
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	W	E	V	D	A	S	T	T	T	P	S	G	E	A	L	A	L	Q	V	T	H	Q	N	D	K	P	F	R	P	V	N	K	E	Q	T	Q	A	A	V	S	L	L	E	K	A	R	Y	S	V	L	E	R	E	D	K	P	T	T	S	K	P	G	A	P	F	I	T	S	T	L	Q	Q	A	A	S	T	R	L	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	V	R	D	F	D	L	V	L	E	H	D	E	E	E	F	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	K	L	V	E	E	R	E	E	L	R	T	P	L	P	P	Y	T	T	E	T	M	L	S	D	A	N	R	I	L	K
Template Known Secondary structure				S	S	S					S				S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														T	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		739	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.																															.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	V	K	K	T	M	M	M	A	Q	R	L	Y	E	A	G	Y	I	T	Y	M	R	T	D	S	T	N	L	S	Q	D	A	V	N	M	V	R	G	Y	I	S	D	N	F	G	K	K	Y	L	P	E	S	P	N	Q	Y	A	S	K	E	N	S	Q	E	A	H	E	A	I	R	P	S	D	V	N	V	M	A	E
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	S	V	K	Q	T	M	Q	I	A	Q	E	L	F	E	N	G	L	I	T	Y	H	R	T	D	S	T	R	V	S	D	V	G	Q	R	I	A	K	E	Y	L	G	D	D	F	V	G	R	E	W	.	.	.	.	.	.	.	.	.	.	.	G	E	S	G	A	H	E	C	I	R	P	T	R	P	L	T	R	D	D
Template Known Secondary structure																	T	T	S	B	S		S	S																			S	S	S	B						.	.	.	.	.	.	.	.	.	.	.				S	S						B	S	S	S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.												.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
												379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	S	L	K	D	M	E	A	D	A	Q	K	L	Y	Q	L	I	W	R	Q	F	V	A	C	Q	M	T	P	A	K	Y	D	S	T	T	L	T	V	G	A	G	D	F	R	L	K	A	R	G	R	I	L	R	F	D	G	W	T	K	V	M	P	A	L	R	K	G	D	E	D	R
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																		.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		V	Q	R	L	I	Q	E	G	V	L	V	V	E	G	L	R	W	E	H	F	A	L	Y	D	L	I	F	R	R	F	M	A	S	Q	C	R	P	F	K	V	V	V	K	K	Y	S	I	E	F	D	G	K	T	A	E	E	E	R	I	V	R	A	E	G	R	A	Y	E	L	Y	R	A	V	W	V	.	.	.	.	.
Template Known Secondary structure									T	S	S			S	S																					B															T	T													S									S			.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	P	A	V	N	K	G	D	A	L	T	L	V	E	L	T	P	A	Q	H	F	T	K	P	P	A	R	F	S	E	A	S	L	V	K	E	L	E	K	R	G	I	G	R	P	S	T	Y	A	S	I	I	S	T	I	Q	D	R	G	Y	V	R	V	E	N	R	R	F	Y	A	E	K	M	G	E	I	V	T	D
Query Conservation
Alig confidence		.									.	.	.	.
Template Conservation		.									.	.	.	.
Template Sequence		.	K	N	E	L	P	T	G	T	.	.	.	.	F	R	V	K	A	E	V	K	S	V	P	K	V	L	P	F	T	Q	S	E	I	I	Q	M	M	K	E	R	G	I	G	R	P	S	T	Y	A	T	I	V	D	R	L	F	M	R	N	Y	V	V	E	K	Y	G	R	M	I	P	T	K	L	G	I	D	V	F	R
Template Known Secondary structure		.									.	.	.	.												S	S																T				T	T	T											T	T	S					T	T
Template Predicted Secondary structure		.									.	.	.	.
Template SS confidence
			933	.	.	.	.	.	.	940					.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	E	N	F	R	E	L	M	N	Y	D	F	T	A	Q	M	E	N	S	L	D	Q	V	A	N	H	E	A	E	W	K	A	V	L	D	H	F	F	S	D	F	T	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	V	R	R	Y	A	K	F	V	S	E	D	R	T	R	D	L	E	S	R	M	D	A	I	E	R	G	E	L	D	Y	L	K	A	L	E	D	M	Y	A	E	I	K	S	I
Template Known Secondary structure																												T	T		S															T	T
Template Predicted Secondary structure
Template SS confidence
		1008	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.