Job Description P12995 Confidence 99.97% Date Thu Jan 5 11:33:14 GMT 2012 Rank 49 Aligned Residues 332 % Identity 17% Template d1wyub1 SCOP info PLP-dependent transferase-like PLP-dependent transferases Glycine dehydrogenase subunits (GDC-P) Resolution 2.10

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.
Predicted Secondary structure																								.	.	.																											.																											.
Query SS confidence																								.	.	.																											.																											.
Query Sequence		Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	.	.	.	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	.	A
Query Conservation																								.	.	.																											.																											.
Alig confidence																								.	.	.																				.	.						.																											.
Template Conservation																																														.	.
Template Sequence		K	Y	N	P	K	L	H	E	E	A	A	R	L	F	A	D	L	H	P	Y	Q	D	P	R	T	A	Q	G	A	L	R	L	M	W	E	L	G	E	Y	L	K	A	L	T	.	.	G	M	D	A	I	T	L	E	P	A	A	G	A	H	G	E	L	T	G	I	L	I	I	R	A	Y	H	E	D	R	G	E	G	R
Template Known Secondary structure														T	T	S	S			T	T	S		G	G	G																				.	.	T		S							S	S																			T	T		T	T
Template Predicted Secondary structure																																														.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.	.	.
Template Sequence		T	R	R	V	V	L	V	P	D	S	A	H	G	S	N	P	A	T	A	S	M	A	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	R	E	I	P	S	G	P	E	G	E	V	.	.	.	.	.	.	D	L	E	A	L	K	R	E	L	.	.	.	G	P	H	V	A	A	L	M	L	T	N	P
Template Known Secondary structure		T								T	T	S		T									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.							B		T	T	S	S	B	.	.	.	.	.	.										.	.	.	S	T	T								S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.										.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.														.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.					.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	.	.	.	.	G	G	T	M	T	L	S	A	T	L	T	T
Query Conservation																																																																		.	.	.	.
Alig confidence		.										.	.	.	.																								.	.																										.	.	.	.
Template Conservation		.										.	.	.	.																								.	.
Template Sequence		.	N	T	L	G	L	F	E	R	R	.	.	.	.	I	L	E	I	S	R	L	C	K	E	A	G	V	Q	L	Y	Y	D	G	A	N	L	N	.	.	A	I	M	G	W	A	R	P	G	D	M	G	F	D	V	V	H	L	N	L	H	K	T	F	T	V	P	H	G	G	G	G	P	G	S	G	P	V	G	V	K
Template Known Secondary structure		.		T	T	S				T	T	.	.	.	.												T							G	G	G	G	G	.	.	G	T	T	T	T							T		S						T	T	T	T	T					T	T	S
Template Predicted Secondary structure		.										.	.	.	.																								.	.
Template SS confidence
			213	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		290	.	.	.	.	.	.															.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query Sequence		R	E	V	A	E	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	.	.	.	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence		A	H	L	A	P	Y	L	P	V	P	L	V	E	R	G	E	E	G	F	Y	L	D	F	D	R	P	K	S	I	G	R	V	R	S	F	Y	G	N	F	L	A	L	V	R	A	W	A	Y	I	R	T	L	G	L	E	G	L	K	K	A	A	A	L	A	V	L	N	A	R	Y	L	K	E	L	L	K	E	K	G	Y
Template Known Secondary structure		G	G	G	G	G	G			S							S	S									T	T					S	S	S	T	T	S																																									T	T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.							.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	.	.	.	.	.	.	F	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation																																										.	.	.	.	.	.
Alig confidence											.	.																														.	.	.	.	.	.
Template Conservation											.	.
Template Sequence		R	V	P	Y	D	G	P	S	M	.	.	H	E	F	V	A	Q	P	P	E	G	F	R	A	L	D	L	A	K	G	L	L	E	L	G	F	H	P	P	T	V	Y	F	P	L	I	V	K	E	A	L	M	V	E	P	T	E	T	E	A	K	E	T	L	E	A	F	A	E	A	M	G	A	L	L	K	K
Template Known Secondary structure		B		S	S		S	S			.	.	S					B		S	T	T													T	T							S		S	T	T	S	T	T								T	T	S																	T	S
Template Predicted Secondary structure											.	.
Template SS confidence
		366	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions