Job Description P12995 Confidence 99.76% Date Thu Jan 5 11:33:14 GMT 2012 Rank 208 Aligned Residues 333 % Identity 8% Template d1w23a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.08

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.									.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.																						.	.
Query SS confidence																																												.	.	.	.	.	.	.	.																						.	.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	.	.	.	.	.	.	.	.	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	.	.	V	F	L	A	D	S	G
Query Conservation																																												.	.	.	.	.	.	.	.																						.	.
Alig confidence											.	.					.	.	.																									.	.	.	.	.	.	.	.																						.	.
Template Conservation											.	.					.	.	.
Template Sequence		K	Q	V	F	N	F	N	A	G	.	.	P	S	A	L	.	.	.	P	K	P	A	L	E	R	A	Q	K	E	L	L	N	F	N	D	T	Q	M	S	V	M	E	L	S	H	R	S	Q	S	Y	E	E	V	H	E	Q	A	Q	N	L	L	R	E	L	L	Q	I	P	N	D	Y	Q	I	L	F	L	Q	G	G	A
Template Known Secondary structure									S	S	.	.	S				.	.	.											T	S	S	S	S	T	T	S	S	S		G	G	G	S		T	T	S																			T			T	T							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10			.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V
Query Conservation
Alig confidence											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	Q	F	T	M	L	P	M	.	.	.	.	.	.	.	N	L	L	T	K	G	T	I	G	N	Y	V	L	T	G	S	W	S	E	K	A	L	K	E	A	K	L	L	G	E	T	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	S	T	K	A	N	S	Y	Q
Template Known Secondary structure											.	.	.	.	.	.	.					T	T									S												T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G	G	G	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.								.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.																						.	120	.	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Sequence		S	I	P	D	F	S	E	F	Q	L	N	E	N	D	A	Y	L	H	I	T	S	N	N	T	I	Y	G	T	Q	Y	Q	.	.	.	.	.	.	.	.	.	N	F	P	E	I	N	H	A	P	L	I	A	D	M	S	S	D	I	L	S	R	P	L	K	V	.	.	.	.	.	.	.	N	Q	F	G	M	I	Y	A
Template Known Secondary structure		S				G	G	G					T	T								S			T	T	T	T				S	.	.	.	.	.	.	.	.	.	S						S	S							T	T	T	T	T	S	S				G	.	.	.	.	.	.	.	G	G		S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.											.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	.	.	.	.	.	.	.	.	.	.	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	.	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V
Query Conservation																																	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																																	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		G	A	Q	K	N	L	G	P	S	G	V	T	V	V	I	V	K	K	D	L	L	N	T	K	V	E	Q	V	P	T	M	L	Q	Y	A	T	H	I	K	S	D	S	L	Y	N	T	P	P	T	F	S	I	Y	M	L	R	N	V	L	D	W	I	K	D	L	G	G	A	E	A	I	A	K	Q	N	E	E	K	A	K
Template Known Secondary structure			T	T	T	T	T	S		T	T													S			T	T			G	G	G								T	T	T		S	S																				T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																							.	.																																	.	.	.
Query SS confidence																							.	.																																	.	.	.
Query Sequence		Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	.	.	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A
Query Conservation																							.	.																																	.	.	.
Alig confidence																							.	.																																	.	.	.
Template Conservation
Template Sequence		I	I	Y	D	T	I	D	E	S	N	G	F	Y	V	G	H	A	E	K	G	S	R	S	L	M	N	V	T	F	N	L	R	N	E	E	L	N	Q	Q	F	L	A	K	A	K	E	Q	G	F	V	G	L	N	G	H	R	S	V	G	G	C	R	A	S	I	Y	N	A	V	P	I	D	A	C	I	A	L	R	E	L
Template Known Secondary structure									T	T	T	T	S	S			S	S		G	G	G	B		S	S							S	S														T	T			S		B			T	T	T		S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		417	.	.	420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	R	A	V	Q	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	Q	F	K	E	N	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		353	.	.	.	.	.	.	360

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions