Return to main results Retrieve Phyre Job Id

Job DescriptionP12995
Confidence100.00%DateThu Jan 5 11:33:14 GMT 2012
Rank28Aligned Residues385
% Identity32%Templated1vefa1
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  TDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG
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Template Sequence  RALLEAEKTLDSGVYNKH. . . . . DLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQT.
Template Known Secondary structure  S
S
S


.....SS
BTTTS
SST
TT
BT





TT.
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   10.........20....... ..30.........40.........50.........60.........70.........80...
 
   83......90.........100.........110.........120.........130.........140.........150.........160..
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Query Sequence  ITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMH
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Template Sequence  LPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH. . . . . TGRKKFVAAMRGFSGRTMGSLSVTWEPKYRE
Template Known Secondary structure  S

TS
TTSS.....S

TT



SST


G
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   84.....90.........100.........110.........120....... ..130.........140.........150........
 
   163......170.........180.........190.........200.........210.........220.........230.........240..
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Query Sequence  SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILL
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Template Sequence  PFLPLVEP. . . . . . . . . . . . . . . VEFIPYNDVEALKRAVDEETAAVILEPV. QGEGGVRPATPEFLRAAREITQEKGALL
Template Known Secondary structure  GG
S
SS
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TT


TT
S.TTTTS

T
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   159160...... ...170.........180.........190.... .....200.........210.........220..
 
   243......250.........260.........270.........280.........290.........300.........310.........320..
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Query Sequence  IADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA
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Template Sequence  ILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALG. GGVPLGVAVMREEVARSMPKGG. . . . . HGTTFGGNPLAMAAGVA
Template Known Secondary structure 
TTTTTTTTSSSSTT


S
GGGG.TTSS
TS
TTS.....S

SSTT
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   223......230.........240.........250....... ..260.........270......... 280.........290......
 
   323......330.........340.........350.........360.........370.........380.........390.... .....400.
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Query Sequence  SLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFG. KLIYLMP
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Template Conservation                      
   
  
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Template Sequence  AIRYLERTRLWERAAELGPWFMEKLRAIP. SPKIREVRGMGLMVGLELKEK. AAPYIARLEKEHRVLALQAGPTVIRFLP
Template Known Secondary structure  TTTS
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TTTTSS
.S

SSTT

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   297..300.........310.........320..... ....330.........340...... ...350.........360.........370....
 
   402.......410.........420..
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Query Sequence  PYIILPQQLQRLTAAVNRAVQ
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Template Sequence  PLVIEKEDLERVVEAVRAVLA
Template Known Secondary structure 
TT


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   375....380.........390.....
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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