Job Description P12995 Confidence 99.80% Date Thu Jan 5 11:33:14 GMT 2012 Rank 194 Aligned Residues 353 % Identity 11% Template d1pmma_ SCOP info PLP-dependent transferase-like PLP-dependent transferases Pyridoxal-dependent decarboxylase Resolution 2.00

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.
Predicted Secondary structure																																				.																																.	.	.	.	.
Query SS confidence																																				.																																.	.	.	.	.
Query Sequence		D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	.	.	.	.	.	V	F	L	A	D	S	G	S	V
Query Conservation																																				.																																.	.	.	.	.
Alig confidence												.	.	.	.																					.																																.	.	.	.	.
Template Conservation												.	.	.	.
Template Sequence		D	G	N	A	R	Q	N	L	A	T	.	.	.	.	F	C	Q	T	W	D	D	E	N	V	H	K	L	M	D	L	S	I	N	K	N	W	I	D	K	E	E	Y	P	Q	S	A	A	I	D	L	R	C	V	N	M	V	A	D	L	W	H	A	P	A	P	K	N	G	Q	A	V	G	T	N	T	I	G	S	S	E
Template Known Secondary structure		S			G	G	G	B		S		.	.	.	.		S															T	T	T		B	T	T		T	T	T	S																		T	T					T	T	S			S					S	S
Template Predicted Secondary structure												.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.					.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		A	V	E	V	A	M	K	M	A	L	Q	Y	.	.	.	.	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		A	C	M	L	G	G	M	A	M	K	W	R	W	R	K	R	M	E	A	A	G	K	P	T	D	K	P	N	L	V	C	G	P	V	Q	I	C	W	H	K	F	A	R	Y	W	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	R	E	I	P	M	R	P	G	Q	L	F	M	.	.	.	.	.	D
Template Known Secondary structure																						T				S							S	S												T	T		.	.	.	.	.	.	.	.	.	.	.	.	.								B	T	T	B		S		.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.														.	.	.	.	180	.	.	.	.	.	.	.	.	.						190
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.							240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.															.	.
Query SS confidence																																																			.	.	.	.	.	.															.	.
Query Sequence		M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	.	.	.	.	.	.	I	L	L	I	A	D	E	I	A	T	G	F	G	R	.	.	T	G	K	L	F	A	C	E	H
Query Conservation																																																			.	.	.	.	.	.															.	.
Alig confidence										.	.	.																		.	.	.	.	.																	.	.	.	.	.	.															.	.
Template Conservation										.	.	.																		.	.	.	.	.
Template Sequence		P	K	R	M	I	E	A	C	.	.	.	D	E	N	T	I	G	V	V	P	T	F	G	V	T	Y	T	G	.	.	.	.	.	N	Y	E	F	P	Q	P	L	H	D	A	L	D	K	F	Q	A	D	T	G	I	D	I	D	M	H	I	D	A	A	S	G	G	F	L	A	P	F	V	A	P	D	I	V	W	D	F
Template Known Secondary structure										.	.	.		T	T							B	B	S		T	T	T		.	.	.	.	.	B	B																												T	T	G	G	G	T						T	T				S	T
Template Predicted Secondary structure										.	.	.																		.	.	.	.	.
Template SS confidence
		191	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.										.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																			.														.	.	.	.	.	.	.	.	.
Query SS confidence																			.														.	.	.	.	.	.	.	.	.
Query Sequence		A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	.	T	M	T	L	S	A	T	L	T	T	R	E	V	.	.	.	.	.	.	.	.	.	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W
Query Conservation																			.														.	.	.	.	.	.	.	.	.
Alig confidence																			.														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	P	R	V	K	S	I	S	A	S	G	H	K	F	G	L	A	P	L	G	C	G	W	V	I	W	R	D	E	E	A	L	P	Q	E	L	V	F	N	V	D	Y	L	G	G	Q	I	G	T	F	A	I	N	F	S	R	P	A	G	Q	V	I	A	Q	Y	Y	E	F	L	R	L	G	R	E	G	Y	T	K	V
Template Known Secondary structure		T	S	T	T								T	T	T	T	T				S	S							S	S	G	G	G	S		G	G	G							T	T								S			S		B	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370					.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390									.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.									.	.	.	.																					.	.	.	.	.	.	.	.
Query SS confidence																																.	.									.	.	.	.																					.	.	.	.	.	.	.	.
Query Sequence		Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	.	.	G	A	I	G	V	V	E	T	.	.	.	.	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	.	.	.	.	.	.	.	.	R	P	F	G	K	L	I	Y
Query Conservation																																.	.									.	.	.	.																					.	.	.	.	.	.	.	.
Alig confidence																																.	.									.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	N	A	S	Y	Q	V	A	A	Y	L	A	D	E	I	A	K	L	G	P	Y	E	F	I	C	T	G	R	P	D	E	G	I	P	A	V	C	F	K	L	K	D	G	E	D	P	G	Y	T	L	Y	D	L	S	E	R	L	R	L	R	G	W	Q	V	P	A	F	T	L	G	G	E	A	T	D	I	V	V	M	R
Template Known Secondary structure																		T	T	S										T	T	T	B	S	S								T	T				S	S											T	T	T		B								T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	M	C	R	R	G	F	E	M	D	F	A	E	L	L	L	E	D	Y	K	A	S	L	K	Y
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions