Job Description P12995 Confidence 99.90% Date Thu Jan 5 11:33:14 GMT 2012 Rank 107 Aligned Residues 313 % Identity 13% Template d1o69a_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.84

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	A	M	K	S	Q	I	D	A	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y
Query Conservation
Alig confidence												.	.	.	.																						.	.																								.	.	.	.	.	.	.
Template Conservation												.	.	.	.																						.	.																								.	.	.	.	.	.	.
Template Sequence		L	K	Y	I	E	E	V	F	K	S	.	.	.	.	N	Y	I	A	P	L	G	E	F	V	N	R	F	E	Q	S	V	K	D	Y	S	.	.	K	S	E	N	A	L	A	L	N	S	A	T	A	A	L	H	L	A	L	R	V	A	G	.	.	.	.	.	.	.	V	K	Q	D	D	I	V	L	A	S	S	F	T
Template Known Secondary structure												.	.	.	.	T	T	T	S		T	T															.	.			S						S													T	T	.	.	.	.	.	.	.			T	T							S	S	S
Template Predicted Secondary structure												.	.	.	.																						.	.																								.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.					.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.								.	70	.	.	.	.	.	.	.	.	.	80	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.						.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.						.
Template Sequence		F	I	A	S	V	A	P	I	C	Y	L	K	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	F	I	D	C	D	E	T	Y	N	I	D	V	D	L	L	K	L	A	I	K	E	C	E	K	K	P	K	A	L	I	L	T	H	L	Y	.	.	.	.	G	N	A	A	K	.
Template Known Secondary structure			G	G	G	T						T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						B		T	T	S	S	B													S	S										G	G	.	.	.	.	G					.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.						.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.																				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.																								.	.	.	.
Query SS confidence																																																			.	.	.	.																								.	.	.	.
Query Sequence		P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	.	.	.	.	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	.	.	.	.
Query Conservation																																																			.	.	.	.																								.	.	.	.
Alig confidence		.	.	.																							.	.	.	.																					.	.	.	.									.															.	.	.	.
Template Conservation		.	.	.																							.	.	.	.																																	.
Template Sequence		.	.	.	M	D	E	I	V	E	I	C	K	E	N	D	I	V	L	I	E	D	A	A	E	A	.	.	.	.	L	G	S	F	Y	K	N	K	A	L	G	T	F	G	E	F	G	V	Y	S	Y	N	G	N	K	I	I	T	T	S	G	G	.	G	M	L	I	G	K	N	K	E	K	I	E	K	A	R	F	Y	S
Template Known Secondary structure		.	.	.											T	T								T	T		.	.	.	.	T	T				T	T			T	T	S	S	S	S								T	T	S	S	S			S	S		.						S												T
Template Predicted Secondary structure		.	.	.																							.	.	.	.																																	.
Template SS confidence
					138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.					160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
					297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Q	A	R	E	N	C	L	H	Y	E	H	L	D	Y	G	Y	N	Y	R	L	S	N	V	L	G	A	I	G	V	A	Q	M	E	V	L	E	Q	R	V	L	K	K	R	E	I	Y	E	W	Y	K	E	F	L	G	E	Y	F	S	F	L	D	E	L	E	N	S	R	S	N	R	W	L	S	T	A	L	I	N	F
Template Known Secondary structure		B	T				S	S	S	S				S	S				B		B														T	T																				T	T	T								T	T						S	S						S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
									359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.																										.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	M	P	P	Y	I	I	L
Query Conservation		.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	K	N	E	L	N	A	C	Q	K	D	I	N	I	S	Q	K	N	I	T	L	H	P	K	I	S	K	L	I	E	D	L	K	N	K	Q	I	E	T	R	P	L	W	K	A	M	H	T	Q	E	V	F	K	G	A	K	A	Y	L	N	G	N	S	E	L	F	F	Q	K	G	I	C	L	P	S	G	T	A	M	S
Template Known Secondary structure			G	G	G	S																														T	T				B						G	G	G		G	G	G	T	T							S																T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D	D	V	Y	E	I	S	K	L	I	L	K	S	I	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions