Job Description P12995 Confidence 99.74% Date Thu Jan 5 11:33:14 GMT 2012 Rank 213 Aligned Residues 346 % Identity 14% Template d1ejia_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.90

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.
Predicted Secondary structure																																		.	.	.	.																		.	.	.																				.	.	.	.
Query SS confidence																																		.	.	.	.																		.	.	.																				.	.	.	.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	.	.	.	.	M	S	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	.	.	.	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	F	L	A	D	.	.	.	.	S
Query Conservation																																		.	.	.	.																		.	.	.																				.	.	.	.
Alig confidence											.	.					.	.	.															.	.	.	.																		.	.	.																				.	.	.	.
Template Conservation											.	.					.	.	.
Template Sequence		R	V	G	L	E	L	I	A	S	.	.	E	N	F	A	.	.	.	S	R	A	V	L	E	A	L	G	S	S	L	N	N	K	Y	S	E	G	Y	P	G	Q	R	Y	Y	G	G	T	E	F	I	D	E	L	E	X	L	C	Q	K	R	A	L	Q	A	Y	H	L	D	P	Q	C	W	G	V	N	V	Q	P	Y	S
Template Known Secondary structure			S	S					T	T	.	.					.	.	.									T	S	G	G	G	G					S		S	S	S		S	S	S																				T	T			T	T	T								S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.			.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.																																						.	.	.	.	.																	.	.	.
Template Conservation											.	.	.	.	.	.	.	.																																						.	.	.	.	.																	.	.	.
Template Sequence		G	S	P	A	N	F	A	V	Y	.	.	.	.	.	.	.	.	T	A	L	V	E	P	H	G	R	I	X	G	L	D	L	P	D	G	G	H	L	T	H	G	F	X	T	D	K	K	K	I	S	A	T	S	I	.	.	.	.	.	F	F	E	S	X	P	Y	K	V	Y	P	E	T	G	Y	I	.	.	.	N	Y
Template Known Secondary structure											.	.	.	.	.	.	.	.				T		T	T								G	G	G	T			G	G	G			B		S	S		B		S					.	.	.	.	.		S							B		T	T	T		S	B	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																																						.	.	.	.	.																	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C
Query Conservation
Alig confidence																.	.										.	.	.	.					.	.	.																						.																.
Template Conservation																.	.										.	.	.	.					.	.	.																						.																.
Template Sequence		D	Q	L	E	E	N	A	S	L	F	H	P	K	L	.	.	I	I	A	G	T	S	C	Y	S	.	.	.	.	R	N	L	D	.	.	.	Y	A	R	L	R	K	I	A	D	D	N	G	A	Y	L	X	A	D	X	A	H	.	I	S	G	L	V	A	A	G	V	V	P	S	P	F	E	.	H	C	H	V	V	T
Template Known Secondary structure														S		.	.						S	S			.	.	.	.	S				.	.	.											T	T								G	G	.	G						T	T	S	S			G	G	G	.	T		S
Template Predicted Secondary structure																.	.										.	.	.	.					.	.	.																						.																.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.					.	.	.	210				.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																												.
Template Sequence		T	T	T	H	K	T	L	R	G	C	R	A	G	X	I	F	Y	R	K	G	V	R	S	V	D	P	K	T	G	K	E	T	Y	Y	E	L	E	S	L	I	N	S	.	A	V	F	P	G	L	Q	G	G	P	H	N	H	A	I	A	G	V	A	V	A	L	K	Q	A	X	T	T	E	F	K	I	Y	Q	L	Q	V
Template Known Secondary structure				S	S	G	G	G				S															S	T	T															.			T	T	T	T			S																	T	S
Template Predicted Secondary structure																																												.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.											.	.	.	.	.					400	.
Predicted Secondary structure																																								.																					.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query SS confidence																																								.																					.	.	.	.	.	.	.	.	.	.						.	.	.	.
Query Sequence		A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	.	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	.	.	.	.	M	P
Query Conservation																																								.																					.	.	.	.	.	.	.	.	.	.						.	.	.	.
Alig confidence																											.	.												.																					.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation																											.	.
Template Sequence		L	A	N	C	R	A	L	S	D	A	L	T	E	L	G	Y	K	I	V	T	G	G	S	D	N	.	.	H	L	I	L	X	D	L	R	S	K	G	T	D	G	G	R	A	E	K	V	L	E	A	C	S	I	A	C	N	K	N	T	C	P	G	D	K	S	A	L	R	P	S	G	L	R	L	G	T	P	A	L	T
Template Known Secondary structure															T	T			B	T	T	S	S		S	S	.	.	S						G	G	G	G	T													T	T				B					S	S	S	S		T	T	S		S
Template Predicted Secondary structure																											.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	R	G	L	L	E	E	D	F	Q	K	V	A	H	F	I	H	R	G	I	E	L
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions