Job Description P12995 Confidence 99.86% Date Thu Jan 5 11:33:14 GMT 2012 Rank 145 Aligned Residues 338 % Identity 13% Template d1dfoa_ SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 2.40

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.								.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.
Predicted Secondary structure																																.					.	.	.	.	.	.	.																															.
Query SS confidence																																.					.	.	.	.	.	.	.																															.
Query Sequence		R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	.	D	A	M	S	.	.	.	.	.	.	.	H	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E	C	V	.	F	L	A	D	S	G	S
Query Conservation																																.					.	.	.	.	.	.	.																															.
Alig confidence											.	.					.	.	.													.					.	.	.	.	.	.	.																								.	.						.
Template Conservation											.	.					.	.	.																																																.	.
Template Sequence		E	E	H	I	E	L	I	A	S	.	.	E	N	Y	T	.	.	.	S	P	R	V	M	Q	A	Q	G	S	Q	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	Y	V	D	I	V	E	Q	L	A	I	D	R	A	K	E	L	F	.	.	G	A	D	Y	A	N	V	Q	P	H	S	G	S
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					.	.	T		S							S	S
Template Predicted Secondary structure											.	.					.	.	.																																																.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.			.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.			.	.	.	90	.	.	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	.	.	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M
Query Conservation																																	.	.
Alig confidence													.	.	.	.	.	.	.														.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	N	F	A	V	Y	T	A	L	L	.	.	.	.	.	.	.	E	P	G	D	T	V	L	G	M	N	L	A	H	G	G	H	L	T	H	G	S	P	V	N	F	S	G	K	L	Y	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	P	Y	G	I	D	A	T	G	H	I	D	Y
Template Known Secondary structure													.	.	.	.	.	.	.		T	T								T	T	T	T			G	G	G	T		T	T	S						S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B		S	S	S	S	B
Template Predicted Secondary structure													.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.																		.	.	.	.	.	.	.	150	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	G	F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C
Query Conservation
Alig confidence													.	.	.									.									.	.	.	.	.																						.																	.
Template Conservation													.	.	.									.									.	.	.	.	.																						.																	.
Template Sequence		A	D	L	E	K	Q	A	K	E	H	K	.	.	.	P	K	M	I	I	G	G	F	.	S	A	Y	S	G	V	V	D	.	.	.	.	.	W	A	K	M	R	E	I	A	D	S	I	G	A	Y	L	F	V	D	M	A	H	.	V	A	G	L	V	A	A	G	V	Y	P	N	P	V	P	H	.	A	H	V	V	T
Template Known Secondary structure													.	.	.		S							.	S	S			S				.	.	.	.	.											T	T								T	T	.	T							T	S	S				T	T	T	.	S	S
Template Predicted Secondary structure													.	.	.									.									.	.	.	.	.																						.																	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.				.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	.	.	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		T	T	T	H	K	T	L	A	G	P	R	G	G	L	I	L	A	K	G	G	S	E	E	L	Y	K	K	L	N	S	A	V	F	P	G	G	Q	G	G	P	L	M	H	V	I	A	G	K	A	V	A	L	K	E	A	M	E	P	E	F	K	T	Y	Q	Q	Q	V	A	K	N	A	K	A	M	V	E	V	F	L	E
Template Known Secondary structure				S	S	S	T	T				S							S	S														T	T	T	T		S	S																T	T	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.												.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Query Sequence		A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	.	.	.	.	.	.	.	.	.	.	.	K	L	I	Y	L	M	P	P	.	.	.	.	Y	I	I	L	P	Q	Q	L	Q	R	L	T
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Alig confidence			.																																												.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation			.
Template Sequence		R	.	G	Y	K	V	V	S	G	G	T	D	N	H	L	F	L	V	D	L	V	D	K	N	L	T	G	K	E	A	D	A	A	L	G	R	A	N	I	T	V	N	K	N	S	V	P	N	D	P	K	S	P	F	V	T	S	G	I	R	V	G	T	P	A	I	T	R	R	G	F	K	E	A	E	A	K	E	L	A
Template Known Secondary structure		T	.	T				G	G	G	S		S	S	S							G	G	G	T													T	T									T	T		S	S		T	T	T		S												T	T
Template Predicted Secondary structure			.
Template SS confidence
		305		.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		415	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	W	M	C	D	V	L	D	S
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions