Job Description P12995 Confidence 100.00% Date Thu Jan 5 11:33:14 GMT 2012 Rank 16 Aligned Residues 395 % Identity 26% Template c3nuiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 Resolution 2.00 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		V	Y	P	V	V	S	A	E	G	C	E	L	I	L	S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	V	.	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	L	E
Query Conservation																																																							.
Alig confidence																																																							.
Template Conservation
Template Sequence		T	V	V	V	T	H	G	E	G	P	Y	I	V	D	V	N	G	R	R	Y	L	D	A	N	S	G	L	W	N	M	V	A	G	F	D	H	K	G	L	I	D	A	A	K	A	Q	Y	E	R	F	P	G	Y	H	A	F	F	G	R	M	S	D	Q	T	V	M	L	S	E	K	L	V	E	V	S	P	F	D	S	G
Template Known Secondary structure										T	T					T	T							T	T					T		T	T		S																						B	T	T	B																S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.																																															.	.	.	.
Query SS confidence																															.																																															.	.	.	.
Query Sequence		C	V	F	L	A	D	S	G	S	V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	.	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	.	.	.	.
Query Conservation																															.																																															.	.	.	.
Alig confidence																															.																											.	.																			.	.	.	.
Template Conservation																																																										.	.
Template Sequence		R	V	F	Y	T	N	S	G	S	E	A	N	D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	P	Y	.	.	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R	Y
Template Known Secondary structure							S	S																			T	T		T	T								T	T					S	S							S			G	G	.	.	G	G	G	G	T		S		T	T
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.																								.
Query SS confidence		.	.	.																								.
Query Sequence		.	.	.	S	R	M	D	G	E	W	D	E	R	D	M	V	G	F	A	R	L	M	A	A	H	R	.	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G
Query Conservation		.	.	.																								.
Alig confidence		.	.	.																								.												.
Template Conservation																																								.
Template Sequence		G	E	E	G	E	T	E	E	Q	F	V	A	R	L	A	R	E	L	E	E	T	I	Q	R	E	G	A	D	T	I	A	G	F	F	A	E	P	V	.	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q	A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	G	F	G	R	T	G
Template Known Secondary structure				T	T																							G	G	G								S	S	.	B	S	T	T	T	S	B				T	T												T	T								T	T	T	T	T	T	T	T	S
Template Predicted Secondary structure																																								.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.		.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		K	L	F	A	C	E	H	A	E	I	A	P	D	I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	.	.	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence		N	T	W	G	C	V	T	Y	D	F	T	P	D	A	I	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I	E	E	F	P	H	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	V	V	M	N	E	G	L	A
Template Known Secondary structure		S	S	S					T	T				S						G	G	G	G	T	T	S	S																							T	S			T	T																							S	S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.												.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A	P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	.	.	.	.	.	.	.	.	.	.	.	H	P	V	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	G	K	L	I	Y	L	M	P	P
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	V	R	R	L	A	P	R	F	E	E	R	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	K	A	S	K	T	P	F	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	R	P	L	G	Q	S	V	V	L	C	P	P
Template Known Secondary structure																			T	T	S	T	T								T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R	A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	I	L	T	E	A	Q	M	D	E	M	F	D	K	L	E	K	A	L	D	K
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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