Job Description P12995 Confidence 99.89% Date Thu Jan 5 11:33:14 GMT 2012 Rank 116 Aligned Residues 349 % Identity 15% Template c3nraA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																									.	.																										.	.	.
Query SS confidence																																									.	.																										.	.	.
Query Sequence		L	S	D	G	R	R	L	V	D	G	M	S	S	W	W	A	A	I	H	G	Y	N	H	P	Q	L	N	A	A	M	K	S	Q	I	D	A	M	S	H	.	.	V	M	F	G	G	I	T	H	A	P	A	I	E	L	C	R	K	L	V	A	M	T	P	Q	P	.	.	.	L	E	C	V	F	L	A	D	S	G	S
Query Conservation																																									.	.																										.	.	.
Alig confidence															.	.																									.	.																										.	.	.
Template Conservation															.	.
Template Sequence		A	P	I	E	G	R	P	V	D	F	S	H	G	.	.	D	V	D	A	H	E	P	T	P	G	A	F	D	L	F	S	A	G	V	Q	S	G	G	V	Q	A	Y	T	E	Y	R	G	D	L	G	I	R	D	L	L	A	P	R	L	A	A	F	T	G	A	P	V	D	A	R	D	G	L	I	I	T	P	G	T	Q
Template Known Secondary structure						S					T	T	S		.	.		T	T	T	S				T	T												T					S			T	T																		T	S				T	T	T	S					S
Template Predicted Secondary structure															.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	V	E	V	A	M	K	M	A	L	Q	Y	W	Q	A	K	G	E	A	R	Q	R	F	L	T	F	R	N	G	Y	H	G	D	T	F	G	A	M	S	V	C	D	P	D	N	S	M	H	S	L	W	K	G	Y	L	P	E	N	L	F	A	P	A	P	Q	S	R	M	D	G	E	W	D	E	R	D	M	V	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	L	F	L	A	V	.	.	.	.	.	.	.	.	A	A	T	V	A	R	G	D	K	V	A	I	V	Q	P	D	Y	F	A	N	R	K	L	V	E	F	F	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	E	X	V	P	V	Q	L	D	Y	V	S	A	D	E	T	R	A	G	L	D	L	T	G
Template Known Secondary structure									.	.	.	.	.	.	.	.		T	T			T	T								S			T									T	T		.	.	.	.	.	.	.	.	.	.	.	.	.							B				S	S			S	S			B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.														.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		F	A	R	L	M	A	A	H	R	H	E	I	A	A	V	I	I	E	P	I	V	Q	G	A	G	G	M	R	M	Y	H	P	E	W	L	K	R	I	R	K	I	C	D	R	E	G	I	L	L	I	A	D	E	I	A	T	G	F	G	R	T	G	K	L	F	A	C	E	H	A	E	I	A	P	D	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence									.	.	.																.	.																																																	.	.	.	.	.
Template Conservation									.	.	.																.	.
Template Sequence		L	E	E	A	F	K	A	.	.	.	G	A	R	V	F	L	F	S	N	P	N	N	P	A	G	.	.	V	V	Y	S	A	E	E	I	G	Q	I	A	A	L	A	A	R	Y	G	A	T	V	I	A	D	Q	L	Y	S	R	L	R	Y	A	G	A	S	Y	T	H	L	R	A	E	A	A	V	D	A	E	N	V	V
Template Known Secondary structure								T	.	.	.	T								S	S		T	T	T		.	.																			T								T	T	T	T	S	B		T	T						G	G	G		T	T	S		G	G	G
Template Predicted Secondary structure									.	.	.																.	.
Template SS confidence
		171	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	C	L	G	K	A	L	T	G	G	T	M	T	L	S	A	T	L	T	T	R	E	V	A	E	T	I	S	N	G	E	A	G	C	F	M	H	G	P	T	F	M	G	N	P	L	A	C	A	A	A	N	A	S	L	A	I	L	E	S	G	D	W	Q	Q	Q	V	A	D	I	E	V	Q	L	R	E	Q	L	A
Query Conservation
Alig confidence																																				.	.	.	.	.																					.
Template Conservation																																				.	.	.	.	.																					.
Template Sequence		T	I	X	G	P	S	T	E	S	L	S	G	Y	R	L	G	V	A	F	G	S	R	A	I	I	A	R	X	E	K	L	Q	A	I	.	.	.	.	.	V	S	L	R	A	A	G	Y	S	Q	A	V	L	R	G	W	F	D	E	A	.	P	G	W	X	E	D	R	I	A	R	H	Q	A	I	R	D	E	L	L	H
Template Known Secondary structure												G	G	G																						.	.	.	.	.		T	S	S	S						G	G	G	G	G	T	T				.	T	T
Template Predicted Secondary structure																																				.	.	.	.	.																					.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.			.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.								.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.																				.	.	.	.	.	.	.
Query SS confidence																												.	.																				.	.	.	.	.	.	.
Query Sequence		P	A	R	D	A	E	M	V	A	D	V	R	V	L	G	A	I	G	V	V	E	T	T	H	P	V	.	.	N	M	A	A	L	Q	K	F	F	V	E	Q	G	V	W	I	R	P	F	.	.	.	.	.	.	.	G	K	L	I	Y	L	M	P	P	Y	I	I	L	P	Q	Q	L	Q	R	L	T	A	A	V	N	R
Query Conservation																												.	.																				.	.	.	.	.	.	.
Alig confidence																												.	.																				.	.	.	.	.	.	.											.	.
Template Conservation																																																																		.	.
Template Sequence		V	L	R	G	E	G	V	F	A	R	T	P	Q	A	G	S	Y	L	F	P	R	L	P	K	L	A	V	A	P	A	E	F	V	K	I	L	R	L	Q	A	G	V	V	V	T	P	G	T	E	F	S	P	H	T	A	D	S	V	R	L	N	F	S	Q	.	.	D	H	E	A	A	V	A	A	A	R	R	I	V	T
Template Known Secondary structure									B					S	B	S	S					B				B	S	S																				G	G	G	T		T	T		T	T	B							S	.	.
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.			.	.	.	.	.	390	.	.	.	.	.	.	.	.
		420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions