Return to main results Retrieve Phyre Job Id

Job DescriptionP12995
Confidence99.55%DateThu Jan 5 11:33:14 GMT 2012
Rank233Aligned Residues307
% Identity13%Templatec3n75E_
PDB info PDB header:lyaseChain: E: PDB Molecule:lysine decarboxylase, inducible; PDBTitle: x-ray crystal structure of the escherichia coli inducible lysine2 decarboxylase ldci
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140.........150.........160......
Predicted Secondary structure 






























Query SS confidence 















































































Query Sequence  PAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK
Query Conservation      

  
          
 
  




   


 

            

      

    
   
           
Alig confidence 












..






















.......


































Template Conservation   
 


 


  
..

  
 






 

 
 
 
 .......   

 


 






  

 



 



 
  
Template Sequence  PHKEAEQYIARVF. . NADRSYMVTNGTSTANKIVGMYS. . . . . . . APAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR
Template Known Secondary structure  ..T
SSS.......

TT
SS

S



Template Predicted Secondary structure  ..




.......












Template SS confidence 















































































   196...200........ .210.........220.........230. ........240.........250.........260......
 
   167..170.........180.........190.........200...... ...210.........220.........230.........240...
Predicted Secondary structure 


























...















Query SS confidence 







































. . .




































Query Sequence  GYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIA. . . AVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI
Query Conservation           
             
   

  
       
...


 

     

        
  
  
    
  

Alig confidence 









.........




















...









....



...











..

Template Conservation     

 
 
 .........        
  

   
 

    







 
....
  
...
  
        ..

Template Sequence  NAYGILGGIP. . . . . . . . . QSEFQHATIAKRVKETPNATWPVHAVITNSTYDG. . . . LLYN. . . TDFIKKTLDVKS. . IH
Template Known Secondary structure 
TT




.........GGGGSSTT

S
SSS
TT
....
...


S..
Template Predicted Secondary structure 









.........














....
...



..
Template SS confidence 















































































   267..270...... ...280.........290.........300.........310 .... .....320...... ..
 
   244.....250....... ..260.........270.........280.........290.........300.........310.......
Predicted Secondary structure 











......



























Query SS confidence 













. . . . . .



























































Query Sequence  ADEIATGFGRTGKL. . . . . . FACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLAC
Query Conservation   


 

 

 
  ......      
   

    
 
  
    
 
     
                
     

 
Alig confidence 













......



























































Template Conservation 







  
 
      

   
   


 












 
 


   
   

  

   






 




Template Sequence  FDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVAST
Template Known Secondary structure 
TT
TTGGGSGGGTTSSTTSS


TT





S

TT
S


S
SS

Template Predicted Secondary structure 












































Template SS confidence 















































































   329330.........340.........350.........360.........370.........380.........390.........400........
 
   318.320.........330.........340.........350 .........360
Predicted Secondary structure  .....................................









Query SS confidence 
































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .









Query Sequence  AAANASLAILESGDWQQQVADIEVQLREQLAPA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RDAEMVADVR
Query Conservation 


 
 
                  
   
  
.....................................     
  

Alig confidence 
































.....................................








.
Template Conservation 
 

  
  
 
  
    
  
  

  
  
        
 
                     
           

.
Template Sequence  ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDP.
Template Known Secondary structure  SSSS


SS
S


S
S


TT

TT

TT

SSS
T.
Template Predicted Secondary structure 








































.
Template SS confidence 















































































   410.........420.........430.........440.........450.........460.........470.........480........
 
   361........370.. .......380.........390 .........400.........410.........420....
Predicted Secondary structure 





..........

.









Query SS confidence 











. . . . . . . . . .

















.

































Query Sequence  VLGAIGVVETTH. . . . . . . . . . PVNMAALQKFFVEQGVWI. RPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE
Query Conservation 
 
 
  
    ..........   
      
   

  .   
  

  
    
 



     
   
 
 
Alig confidence  ...








..........

















.

































Template Conservation  ... 



 
 
    
     



  
   
 
 

  
      

 
 


 
  
   
  

       
Template Sequence  . . . IKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAF
Template Known Secondary structure  ...T
SSB
SSS
B
SS


TT


S
SS

TT

Template Predicted Secondary structure  ...























Template SS confidence 










































































   489490.........500.........510.........520.........530.........540.........550.........560
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions